Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq31371 174 1e-37 seq18004 109 4e-18 seq21397 104 2e-16 seq8185 100 2e-15 seq33507 93.3 3e-13 seq7841 89.7 4e-12 >seq31371 Length=817987 Score = 174 bits (192), Expect = 1e-37 Identities = 765/1194 (64%), Gaps = 20/1194 (2%) Strand=Plus/Minus Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | ||| ||||| || || | || ||||| || |||| || || | | | Sbjct 505278 GTCATCACACCCCCTGCCGTCTCCAGTCCTAGAGACAGGGGAGCTACGTCCAGCAAAAGC 505219 Query 517556 ATATTTTGAAGTTTTTCA---TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCA 517612 | || || | ||||||| || || | ||| ||| ||||||||| || | ||||| Sbjct 505218 AGATCCTGTACTTTTTCAGACTC-GTCTC-CCATCAA-AATAGCTGCCTGTACTGCAGCT 505162 Query 517613 CCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAA 517672 || || || || || || ||||| || | | | || || | ||||| || | Sbjct 505161 CCGTAGGCTACTGCCTCGTCAGGGTTGATGCTCTTGTTGAGATCACGGCCATTAAAGTAG 505102 Query 517673 TTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTC 517731 | ||| |||| ||| |||||||| || || | || || || |||| ||||| || Sbjct 505101 TCCTGAAGGAGTT-TCTGCACCTTAGGGATGCGCGTGGAGCCGCCTACTAGAACAATGTC 505043 Query 517732 ATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 517791 || | | | ||||||| || | |||| | | ||||| || || || || Sbjct 505042 GTGAATTTTAGCCTTATCCATCTTGGCATCCCGAAGAGAGTTTTCCACAGGCTCCAGGGT 504983 Query 517792 CGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TAT 517850 | ||||||||| ||||| ||| || || ||||| ||||| || || || | || Sbjct 504982 CCCTCTAAACAGGTCTGCACACAGCTCCTCGAACAGGGCTCTGGT--GATGGATGTGTAG 504925 Query 517851 AA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGT 517909 || ||||| || ||||||| || || | ||| | | | || || || || ||| Sbjct 504924 AAGTCAATGCCCTCGAACAGCGACTCGATTTCCAGGTTGGCCTGCGTGCTGGACGACAGT 504865 Query 517910 GCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTC 517969 | | || || || ||||| ||||| | |||| | | ||| ||| ||| | Sbjct 504864 GTCCTCTTGGCCCGCTCACAGGCTGTGCGCAGTCGCCTCACTGCTC--GCTTGTTGGGGC 504807 Query 517970 AAATCTGTTTTATAT--TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTAT 518027 || | || | | || |||||||| || || || | | || || || || | Sbjct 504806 TGATGTCCTTCTTGTGCTTCCTCTTGAACTCCTCCACGAAGTGGCTCACCAGCCGGTTGT 504747 Query 518028 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 518087 | || || || || |||| | || | || | || || | || | || | |||| Sbjct 504746 CGAAGTCCTCCCCGCCCAGGTGTGTGTCACCGGCAGTGGCCTTGACCTCAAAGATCCCAT 504687 Query 518088 CTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 518147 | || | | || | | |||||| || || ||||||| |||||| || || |||| Sbjct 504686 CGTCTATGGTCAGGACGGACACATCAAATGTGCCTCCACCCAGATCAAAGATGAGGACAT 504627 Query 518148 TCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 518207 | ||| || |||||| || || || || | |||||||| || ||||||| Sbjct 504626 GCCGCTCTCCGTGACCTCCTTTATCTAGCCCGTAGGCGATGGCAGCAGCTGTGGGTTCAT 504567 Query 518208 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 518267 | || ||||||| ||||| || || ||||| ||||| || || ||||| || | || Sbjct 504566 TGATGATTCTCAGCACATTGAGTCCGGCAATCACACCTGCGTCCTTGGTGGCCTGGCGTT 504507 Query 518268 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATAT 518327 | || || || ||||| || || ||||| || || |||| || || | | || | | Sbjct 504506 GAGAGTCATTGAAATAGGCTGGCACAGTGATGACAGCATTGGTGACATTGTGGCCCAAAA 504447 Query 518328 AAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAAT 518387 |||| ||| || | ||||| || | | | ||| || || |||| || ||| | Sbjct 504446 AAGCCTCTGCAGTCTCCTTCATCTTTGTCAGCACCATGGAAGAGATTTCCTCAGGGTAGA 504387 Query 518388 ATTGCTTGGA--TTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAAT 518445 | |||| | | |||| || || || | | || || || |||| || Sbjct 504386 AA-GCTTTCTCCTCCCCTTTG-TAGGACACCAGTACCTTGGGCTTGCCTCCTTCATTGAT 504329 Query 518446 AACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACC 518505 |||| ||||||||| ||||||||| || || ||| | || ||||| | || || Sbjct 504328 CACTTGAAATGGCCAAAGTTTCATATCGGACTGCACAACAGGATCGTTAAACTTCCTGCC 504269 Query 518506 AATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGC 518565 ||| | ||||| |||||||||| ||| || ||||| || || | || | ||||| Sbjct 504268 AATCAGACGTTTGGCATCAAAAACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGGC 504209 Query 518566 TGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATT 518625 || ||||||||||| | ||||| || || || | ||||| || || ||||| || Sbjct 504208 CGCGTCTCCAATCAGGCGCTCTGTGTCGGTGAAGGCCACATAGCTGGGGGTCGTGCGGTT 504149 Query 518626 ACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679 || || ||||| ||||| || || || || |||| || | ||||| || || Sbjct 504148 GCCCTGGTCATTGGCAATGATCTCCACCTTGCCATGCTGGAACACACCCACGCA 504095 >seq18004 Length=963510 Score = 109 bits (120), Expect = 4e-18 Identities = 182/259 (70%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 517505 CCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGA 517564 || || |||||||| | |||||| |||||||||| |||||| | || | | || |||| Sbjct 649071 CCGCCAGCTGTTTCAATACCAAGGGAAAGAGGAGAGACATCCAAGAGCAGCAAATCTTGA 649130 Query 517565 AGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 517624 | |||||| | | ||| ||||| | || | | ||| ||| || | |||||| Sbjct 649131 ACATTTTCAGACTTGTCTCCAGACAGAATGGTGGCCTTCACAGCTGCATCAGAAGCAACA 649190 Query 517625 GCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGT 517684 ||||||||||| |||| ||| ||| |||| ||| |||||||| || | | ||||| Sbjct 649191 GCTTCATCAGGGTTAATGCTTTTATTCAGTTGTTTTCCATTGAAGAAGTCTTGCAGAAGC 649250 Query 517685 TGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATT-TCATGCACCTGTG 517742 | ||| | ||| || ||| | | || | || || | |||||| ||||| | ||||| Sbjct 649251 T-TCTGAATCTTGGGGATATGGGTGGAATCACCCACCAGGACAATTATCATGGATCTGTG 649309 Query 517743 ATTTATCCAGTTTTGAATC 517761 | || || ||||| | ||| Sbjct 649310 ACTTGTCTAGTTTGGCATC 649328 >seq21397 Length=4386595 Score = 104 bits (114), Expect = 2e-16 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 366998 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 367057 |||| || ||||| ||||| ||||| ||||||||| | || || | |||||||||| Sbjct 3756415 TAGCTACTATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAGAGTTATTCATT 3756356 Query 367058 ATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 367117 |||| ||||| ||| | || ||| ||||| || |||||||||||||| || ||||||| Sbjct 3756355 ATGGTGCTCCTAAGGAAATGGAATCATATTACCAGGAAATTGGTAGAGCTGGCCGTGATG 3756296 Query 367118 GA 367119 || Sbjct 3756295 GA 3756294 >seq8185 Length=1120919 Score = 100 bits (110), Expect = 2e-15 Identities = 494/775 (64%), Gaps = 30/775 (4%) Strand=Plus/Plus Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | ||||| ||||| | | |||| ||||||||||||||||| | || | Sbjct 736159 GTCATGACTCCACCAATAGTTTCAATATCAAGGGAAAGAGGAGTGACATCCAAGAGCAGC 736218 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || ||||| |||||| | | || ||||| ||||| || || |||||| Sbjct 736219 AAATCTTGAACATTTTCAGACTTGTCTTCAGATAGAATGGCTGCCTGGGAAGTTGCACCA 736278 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 || |||||| ||||| || |||| | | |||||| | ||| || ||||| || | | Sbjct 736279 TAAGCAACACCTTCACTGGGGTTAATGCTCTTATTTAGCTCTTTTCCTTTGAAGAAGTCT 736338 Query 517676 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCT-CCAACTAATACAATTTCATG 517734 | ||||| | ||| | | ||| | || ||| || || || | |||| | || Sbjct 736339 TACAGAAGCT-TCTGAATCTTGGAGTTACAGGTGAAACTACCTACCAGGACAAGATTGTG 736397 Query 517735 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGC 517794 | |||||| || || ||||| | ||| | ||| || || || || ||| | Sbjct 736398 GATCTGTGACTTGTCTAGTTTGGCATCTTGAAGGGGTTTGTCTACAGGGTCCAGAGTACC 736457 Query 517795 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATC 517854 | |||||||| | | | ||||| ||| | | || |||| || || | || Sbjct 736458 ACAGAACAAGTCAGCATTCAACTCTTCAAATCAAACACTGGTAACAGAGATGTG----TC 736513 Query 517855 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTC---GAAGAAGATAGTGC 517911 ||||| || | |||||||||| ||||| ||| || || || || || || | Sbjct 736514 CATTCCCTCATAGAAAGAATCAATCTCAATACTAGCCTGGGTGCTGGAGGAGGAGAGGGT 736573 Query 517912 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG-GCTTTTG--CTGATTGAT 517967 | ||| | |||||||| || | || | | | || ||| ||| || | |||| Sbjct 736574 GTGCTTATCCCGTTCACAAATAGTGCAGAGACAGCAAACAGAGCTCTTGTTCTCACTGAT 736633 Query 517968 TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTAT 518027 | | || || | | | | | |||||| || ||||| | || || | Sbjct 736634 GCT--TGTGCTTAA-ACTCTGTAATGAAATG----ACTAACCAT----CCAG----TTGT 736678 Query 518028 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 518087 ||| ||||| || ||||| | | | ||| | |||| | | || | || | ||||| Sbjct 736679 TAAAGTCTTCTCCACCCAAGTAGGCGTCTCCAGTTGTAGATTTGACCTCAAAGATTCCAT 736738 Query 518088 CTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 518147 | | || || | | | |||||| || |||||||||| || |||||| || |||| Sbjct 736739 CCTTAATAGTGAGGATTGACACATCAAAAGTGCCACCACCCAAATAAAAAATTAGCACAT 736798 Query 518148 TCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 518207 | | ||| || || || || | | || |||| |||||||||||||| ||||| Sbjct 736799 T--TCTCTGCTTCAACCTTCTTGTCTAAGCTGTAAGCAATAGCAGCAGCAGTTGATTCAT 736856 Query 518208 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262 | |||||||| | ||| | || |||||| | || | |||||||| || || || Sbjct 736857 TGATAATTCTAAGTACAATGAGGCCAGCAGTGGTTTCAGCATCTTTGGTTGCCTG 736911 >seq33507 Length=5509411 Score = 93.3 bits (102), Expect = 3e-13 Identities = 357/550 (65%), Gaps = 22/550 (4%) Strand=Plus/Plus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| |||||||||||||| || |||| | | ||| |||| ||| || ||||| Sbjct 4633698 GCACCATAAGCAACAGCTTCATCGGGGTTAATGCTCTTATTCAGTTCTTTTCCGTTGAAG 4633757 Query 517670 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 || | | ||||| | ||| | ||| || || || | || || || || | ||||| Sbjct 4633758 AAGTCTTGCAGAAGCT-TCTGAATCTTGGGGATCCGGGTGGAACCACCCACCAGAACAAT 4633816 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 ||||| | |||||| || || ||||| | ||| | ||||||| || || || || Sbjct 4633817 ATCATGGATCTGTGACTTGTCTAGTTTGGCATCTCGAAGGGCTTTTTCTACAGGGTCCAG 4633876 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GTGAC 517845 | | |||||||| | | | ||||| ||| ||| | ||||| || ||| Sbjct 4633877 GGTGCCACGGAACAAGTCAGCATTCAACTCTTCAAATCGAGCCCGAGTAATGGAGGTG-- 4633934 Query 517846 ATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGT--CGAAGA 517902 || || || ||||| || | | |||||||| ||||| | | || || | || Sbjct 4633935 --TAGAAGTCGATTCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGGGTGCTGGAGG 4633992 Query 517903 AGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTG 517958 ||| |||| || ||||| || ||||| ||||| | || | || | || ||| | Sbjct 4633993 AGAGAGTG--CGCTTAGCCCGCTCACAGGCTGTGCGGAGCCGGCGGACAGCTCTCTTGTT 4634050 Query 517959 CTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAA 518018 || | |||| || | || | || | ||| || || ||| | | || | Sbjct 4634051 CTCACTGAT----GTCCTTCTTGTGCTTGCGCTTAAACTCAGCAATGAAGTGGTTGACCA 4634106 Query 518019 GACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGA 518078 || || ||||| ||||| || ||||| | || | ||| | |||| | | || | | Sbjct 4634107 TCCGGTTGTCAAAGTCTTCTCCACCCAAGTGGGTGTCTCCAGCTGTAGATTTGACCTCAA 4634166 Query 518079 AAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAA 518138 | | ||||||||||| || | | | |||||| || ||||| |||| |||||| | Sbjct 4634167 AGATTCCATCTTCAATAGTGAGGATTGACACATCAAAAGTGCCACCTCCCAAATCAAATA 4634226 Query 518139 TAAGTACATT 518148 | || ||||| Sbjct 4634227 TCAGCACATT 4634236 Score = 86.0 bits (94), Expect = 5e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| |||| || |||||||||||||| || |||||||| | ||||| || ||||| Sbjct 4634345 CCATAAGCAATTGCCGCAGCAGTTGGTTCGTTGATAATTCTAAGTACATTGAGGCCAGCG 4634404 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || |||| |||||||| || || || | ||||| || || || || || || || || Sbjct 4634405 ATGGTTCCAGCATCTTTGGTTGCCTGCCGCTGTGAGTCATTGAAGTAAGCTGGCACTGTG 4634464 Query 518297 ATAACGGCATCAGTTAC 518313 | || || | ||| || Sbjct 4634465 ACCACTGCGTTAGTAAC 4634481 >seq7841 Length=541876 Score = 89.7 bits (98), Expect = 4e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 635439 AATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTA 635498 ||||||| || || |||| |||||||| || || ||||| | || | || || ||| Sbjct 375168 AATGTACACTTATCCTGACTGAGGGAGACTCGGCCAAAACTCTGGCAGTTTCAGGCCTTG 375109 Query 635499 ATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTA 635558 |||| |||||||||| | || || ||||||||||||||||||||| | | ||||| Sbjct 375108 GTGTTGTTGGAAGAGACAAATACGGTGTTTTCCCACTTAGAGGAAAAATACTCAATGTCC 375049 Query 635559 GGGATGCTAGTCCTAAA 635575 | || ||| || |||| Sbjct 375048 GAGAAGCTTCTCATAAA 375032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3773131980389056