Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq29155 91.5 2e-13 seq26070 82.4 9e-11 >seq29155 Length=1778819 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 112278 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGAC 112337 ||| | || || || ||||||| || ||||||||||| ||||| ||||| |||||||| Sbjct 1086352 TGGTATGCCATCATCGAGTCTCAGACAGAGACTGGTACCCCATACATGCTCTACAAAGAT 1086411 Query 112338 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGT 112397 ||||||||| ||||| || || |||| |||| ||||| | ||||| || Sbjct 1086412 TCCTGTAACCGGAAGAGCAACCAGCAGAACCTGGGAACCATCAAATGCAGTAACCTGTGC 1086471 Query 112398 ACAGAAATCTTGGAATTTACAGACAAAGATGAG 112430 |||||||| | || | ||| |||||||||| Sbjct 1086472 ACAGAAATAGTAGAGTATACCAGCAAAGATGAG 1086504 >seq26070 Length=15207027 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 102192 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCT 102250 || ||||| ||| || || |||||||| ||||||||||| ||| | || | |||||| Sbjct 5605465 GCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCCTT-TGCATCAATATTTTGGCT 5605407 Query 102251 CAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGA 102310 |||||| ||||| || ||||| ||||| || ||||| ||||||||| | | || || Sbjct 5605406 CAAGAAACGAGGACTGATGCCTGGTCTTACATTTTCCAATGAGCTTATCAGTAGAGATGA 5605347 Query 102311 GG 102312 || Sbjct 5605346 GG 5605345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619539897822720