Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq26070 91.5 2e-13 seq29155 82.4 9e-11 seq14035 82.4 9e-11 >seq26070 Length=15207027 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| ||||| |||| |||||||||||||||||||||||| || || ||| |||||||| Sbjct 5603806 ATATTCCCCTACTCTCTTCTCAAAGAAGTTGGTCTTCCCTTCCAGTGAAATATTTTCCAT 5603865 Query 117045 AAAGTCAAATGGATT 117059 |||||||||||||| Sbjct 5603866 GAAGTCAAATGGATT 5603880 >seq29155 Length=1778819 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || || ||||||| |||||||| |||| ||| | || || || || Sbjct 1086504 CTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTACTGCATTTGATGGTTCC 1086445 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| ||||| ||||| ||| || | ||| |||||||||||||| || || || Sbjct 1086444 CAGGTTCTGCTGGTTGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACC 1086385 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 ||||| ||||| |||| || || || | ||| Sbjct 1086384 AGTCTCTGTCTGAGACTCGATGATGGCATACCA 1086352 >seq14035 Length=1410301 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| || || |||| ||| |||||||||||||||||||| || || ||| |||||||| Sbjct 226448 ATATTCACCTACTCTCTTTTCAAAGAAGTTGGTCTTCCCTTCCAGTGAAATATTTTCCAT 226389 Query 117045 AAAGTCAAATGGATT 117059 |||||||||||||| Sbjct 226388 GAAGTCAAATGGATT 226374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588837889194240