Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq31301 89.7 4e-13 seq18022 89.7 4e-13 seq15910 89.7 4e-13 seq6301 89.7 4e-13 seq4153 86.0 5e-12 seq31371 84.2 2e-11 seq26390 84.2 2e-11 seq23497 84.2 2e-11 seq22040 84.2 2e-11 seq18521 84.2 2e-11 seq32384 82.4 6e-11 >seq31301 Length=34915 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | ||| || | | |||| Sbjct 2804 CCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCTG 2863 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || || ||||| ||||| || ||| | | | Sbjct 2864 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACAAGCTCCATGTCCTGGG 2923 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | || | ||||| || | ||| ||||| ||||| |||||||| || Sbjct 2924 TCAGGTCCTCCCCATCCTTCTGCCAGGTCAGGGTGATGTCAGCAGGGTAGAAGCCCAGGG 2983 Query 529 CCCAACA 535 |||| || Sbjct 2984 CCCAGCA 2990 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | ||| || | | |||| Sbjct 28289 CCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCTG 28348 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||| || || || || ||||| ||||| || ||| | | | Sbjct 28349 CCCACTTCTGGAAGGTTCCCTCCCCTGCAGGCCTGGTCTCCACAGGCTCCATGTCCTGGG 28408 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | || | ||||| || | ||| ||||| ||||| |||||||| || Sbjct 28409 TCAGGTCCTCCCCATCCCTCTGCCAGGTCAGGGTGATGTCAGCAGGGTAGAAGCCCAGGG 28468 Query 529 CCCAACA 535 |||| || Sbjct 28469 CCCAGCA 28475 >seq18022 Length=385580 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | ||| || | | |||| Sbjct 39873 CCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCTG 39814 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||| || || |||||||| ||||| || ||| | | | Sbjct 39813 CCCACTTCTGGAAGTTTCCATCCCCTGCAGGTCTGGTCTCCACAAGCTCCATGTCCTGGG 39754 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | || | ||||| || | ||| ||||| ||||| |||||||| || Sbjct 39753 TCAGGTCCTCCCCATCCTTCTGCCAGGTCAGGGTGATGTCAGCAGGGTAGAAGCCCAGGG 39694 Query 529 CCCAACA 535 |||| || Sbjct 39693 CCCAGCA 39687 >seq15910 Length=20191 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | |||||| | | |||| Sbjct 606 CCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGTACCACCACAGCTG 665 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||| || || |||||||| ||||| || ||| | | | Sbjct 666 CCCACTTCTGGAAGTTTCCATCCCCTGCAGGTCTGGTCTCCACAAGCTCCATGTCCTGGG 725 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | || | || | ||||| || | ||| ||||| ||||| |||||||| || Sbjct 726 TCAGGTCTTCCCCATCCCTCTGCCAGGTCAGGGTGATGTCAGCAGGGTAGAAGCCCAAGG 785 Query 529 CCCAACA 535 |||| || Sbjct 786 CCCAGCA 792 >seq6301 Length=317013 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | ||| || | | |||| Sbjct 93246 CCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCTG 93187 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||| || || || ||||| ||||| || ||| | | | Sbjct 93186 CCCACTTCTGGAAGTTTCCATCCCCTGCAGGCCTGGTCTCCACAAGCTCCATGTCCTGGG 93127 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | || | ||||| || | ||| ||||||||||| |||||||| || Sbjct 93126 TCAGGTCCTCCCCATCCCTCTGCCAGGTCAGGGTGATGTCCGCAGGGTAGAAGCCTAGGG 93067 Query 529 CCCAACA 535 |||| || Sbjct 93066 CCCAGCA 93060 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | ||| || | |||| Sbjct 68848 CCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCAGCACAGCTG 68789 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || || ||||| ||||| || ||| | | | Sbjct 68788 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACAAGCTCCATGTCCTGGG 68729 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | || | ||||| || | ||| ||||| ||||| |||||||| || Sbjct 68728 TCAGGTCCTCCCCATCCCTCTGCCAGGTCAGGGTGATGTCAGCAGGGTAGAAGCCCAGGG 68669 Query 529 CCCAACA 535 |||| || Sbjct 68668 CCCAGCA 68662 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | ||| || | | |||| Sbjct 137043 CCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCTG 136984 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||| || || || ||||| ||||| || ||| | | | Sbjct 136983 CCCACTTCTGGAAGTTTCCATCCCCTGCAGGCCTGGTCTCCACAAGCTCCATGTCCTGGG 136924 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAG-CCAGTG 527 |||| | ||| | || | ||||| || | ||| ||||| ||||| |||||| ||||| Sbjct 136923 TCAGGTCCTCCCCATCCCTCTGCCAGGTCAGGGTGATGTCAGCAGGGTAGAAGCCCAGT- 136865 Query 528 GCCCAACA 535 ||||| || Sbjct 136864 GCCCAGCA 136857 >seq4153 Length=173989 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | |||| | | | ||| || | |||| Sbjct 168598 CCTCATGCTGCACATGGCATGTGTATCTCTGCTTCTCTTCAGAAGGCACCACCGCAGCTG 168539 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||| || || || ||||| ||||| || ||| | | | Sbjct 168538 CCCACTTCTGGAAGTTTCCATCCCCTGCAGGCCTGGTCTCCACAAGCTCCATGTCCTGGG 168479 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | || | ||||| || | ||| ||||| ||||| |||||||| || Sbjct 168478 TCAGGTCCTCCCCATCCCTCTGCCAGGTCAGGGTGATGTCAGCAGGGTAGAAGCCCAGGG 168419 Query 529 CCCAACA 535 ||||||| Sbjct 168418 CCCAACA 168412 >seq31371 Length=817987 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/189 (70%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | ||| || | | |||| Sbjct 813268 CCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCTG 813209 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || || ||||| ||||| || ||| | | | Sbjct 813208 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACAAGCTCCATGTCCTGGG 813149 Query 469 TCAG--TTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGT 526 || | |||||| ||| | ||||| || | ||| ||||| ||||| |||||||| Sbjct 813148 TCTGGTTTGCTCCATTCC--TCTGCCAGGTCAGGGTGATGTCAGCAGGGTAGAAGCCCAG 813091 Query 527 GGCCCAACA 535 |||||| || Sbjct 813090 GGCCCAGCA 813082 >seq26390 Length=326163 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | ||| || | | |||| Sbjct 204002 CCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCTG 203943 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||| || || |||||||| ||||| || ||| | | | Sbjct 203942 CCCACTTCTGGAAGTTTCCATCCCCTGCAGGTCTGGTCTCCACAAGCTCCATGTCCTGGG 203883 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAG-CCAGTG 527 |||| | ||| | || ||||| || | ||| ||||| ||||| |||||| |||| | Sbjct 203882 TCAGGTCCTCCCCATCCGACTGCCAGGTCAGGGTGATGTCAGCAGGGTAGAAGTCCAG-G 203824 Query 528 GCCCAACA 535 ||||| || Sbjct 203823 GCCCAGCA 203816 >seq23497 Length=542803 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 13088 GCCTACCTGAGCGACAATGGAATCAGCAGCGCCAGGGAGTATGCAGACAGGAGGTGGATA 13147 |||||||||| ||||||||||| ||||| ||||||| |||||||| |||| |||||| Sbjct 494562 GCCTACCTGAATGACAATGGAATTAGCAGTGCCAGGGTCTATGCAGATAGGAAGTGGATT 494503 Query 13148 TGCAGCAAGCC 13158 || |||||||| Sbjct 494502 TGTAGCAAGCC 494492 >seq22040 Length=174446 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 13088 GCCTACCTGAGCGACAATGGAATCAGCAGCGCCAGGGAGTATGCAGACAGGAGGTGGATA 13147 |||||||||| ||||||||||| ||||| ||||||| |||||||| |||| |||||| Sbjct 115439 GCCTACCTGAATGACAATGGAATTAGCAGTGCCAGGGTCTATGCAGATAGGAAGTGGATT 115380 Query 13148 TGCAGCAAGCC 13158 || |||||||| Sbjct 115379 TGTAGCAAGCC 115369 >seq18521 Length=10679 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 13088 GCCTACCTGAGCGACAATGGAATCAGCAGCGCCAGGGAGTATGCAGACAGGAGGTGGATA 13147 |||||||||| ||||||||||| ||||| ||||||| |||||||| |||| |||||| Sbjct 9198 GCCTACCTGAATGACAATGGAATTAGCAGTGCCAGGGTCTATGCAGATAGGAAGTGGATT 9257 Query 13148 TGCAGCAAGCC 13158 || |||||||| Sbjct 9258 TGTAGCAAGCC 9268 >seq32384 Length=40055 Score = 82.4 bits (90), Expect = 6e-11 Identities = 133/191 (70%), Gaps = 8/191 (4%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | ||| || | | |||| Sbjct 27205 CCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCTG 27264 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||| | || |||||||| ||||| || ||| | | | Sbjct 27265 CCCACTTCTGGAAGTTTCCATCCCTTGCAGGTCTGGTCTCCACAAGCTCCATGTCCTGGG 27324 Query 469 TCAGTTGCTCTGCTCCCATG----TGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCA 524 |||| | ||| |||||| ||||| || | ||| ||||||||||| ||||| || Sbjct 27325 TCAGGTCCTC----CCCATGCCTCTGCCAGGTCAGGGTGATGTCCGCAGGGTAGAAACCC 27380 Query 525 GTGGCCCAACA 535 |||||| || Sbjct 27381 AGGGCCCAGCA 27391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396995947021056