Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq33511 109 4e-19 seq23020 98.7 6e-16 seq16386 84.2 1e-11 seq9583 84.2 1e-11 >seq33511 Length=8354299 Score = 109 bits (120), Expect = 4e-19 Identities = 142/192 (74%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| |||||| | | ||||| |||||||| ||||||| | Sbjct 8199626 TCTTTCTGGATGTTGTAGTCGGAAAGGGTCCAGTCATCCTCCAGCTGCTTTCCGGTGAGG 8199567 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA-ATCTTCTGTTTGACGGA 34909 || || || |||||||| | | | || |||||||| ||| ||||| ||||| | Sbjct 8199566 ATCAGCCGCTGCTGGTCAGGAAGGATGCCTTCCTTGTC-CTAGATCTTGGCCTTGAC--A 8199510 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | ||||| || ||| || || | || ||||| || || || || |||||| Sbjct 8199509 TTCTCGATGGTTTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTC 8199450 Query 34968 ACAAAGATCTGC 34979 |||||||||||| Sbjct 8199449 ACAAAGATCTGC 8199438 >seq23020 Length=748909 Score = 98.7 bits (108), Expect = 6e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || |||| || |||||||| |||||||| Sbjct 60936 TCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCTTCTAGCTGTTTGCCGGCAAAG 60877 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||||||||| ||||| || ||| Sbjct 60876 ATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 60817 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || ||| || || | ||| ||||| || || || || |||||||| Sbjct 60816 TCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 60757 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 60756 AAGATCTGCATTTT 60743 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || || || | || |||| |||||||| || ||||| || Sbjct 61164 TCCTTCTGGATGTTGTAATCAGATAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAG 61105 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||||||||| ||||| || ||| Sbjct 61104 ATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 61045 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || ||| || || | ||| ||||| || || || || |||||||| Sbjct 61044 TCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 60985 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 60984 AAGATCTGCAT 60974 >seq16386 Length=4700455 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||| | ||||| || ||| | || | || ||||| || || || ||||| Sbjct 631306 TCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCCTGCAAAG 631247 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | | | ||||| ||||| ||||| |||||| Sbjct 631246 ATCAGCCTCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTC 631187 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || |||||||| Sbjct 631186 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 631127 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 631126 AAGATCTGCAT 631116 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || | || ||| Sbjct 632464 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCC 632405 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || || ||||| || || |||||||| | | | ||||| ||||| Sbjct 632404 AGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGG 632345 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 632344 ATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 632285 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||| ||||||||||| Sbjct 632284 CCAGTCAGGGTCTTCACGAAGATCTGCAT 632256 >seq9583 Length=785227 Score = 84.2 bits (92), Expect = 1e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | |||| |||||||| || |||||||| Sbjct 67141 TCCTTCTGGATGTTGTAGTCAGACAGAACGTGGCCATCTTCCAGCTGCTTGCCGGCAAAG 67082 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||||| ||| ||||| || ||| Sbjct 67081 ATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTCGTCCTGGATCTTGGCCTTCACGTTC 67022 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || ||| || || | ||| ||||| || || || || |||||||| Sbjct 67021 TCGATGGTGTCGCTGGGCTCCACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 66962 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 66961 AAGATCTGCATTTT 66948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324020441795328