Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq14035 239 5e-58 seq32167 158 1e-33 seq30635 129 7e-25 seq26070 123 3e-23 seq29155 102 9e-17 seq2702 96.9 4e-15 >seq14035 Length=1410301 Score = 239 bits (264), Expect = 5e-58 Identities = 541/804 (67%), Gaps = 42/804 (5%) Strand=Plus/Minus Query 18623 CATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATTTT-TTGATATT 18679 ||||||| | |||||||||||| | || || ||| ||||| || | |||||||| Sbjct 226501 CATCCAAGGTGAAAGAATTCTCTG--TCGGACTTGACATCACTCCTATCCTCTTGATATT 226444 Query 18680 CGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAAT 18739 | | ||||| ||||||||||| || || || || || | ||| ||| |||||| || | Sbjct 226443 CACCTACTCTCTTTTCAAAGAAGTTGGTCTTCCCTTCCAGTGAAATATTTTCCATGAAGT 226384 Query 18740 CAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCG 18799 |||||||||||| ||| | | || | || || || | || | | || || || | Sbjct 226383 CAAATGGATTTTCTACTCTGAAAATCCTGTTAAAGCCCAGCTCGAGCATAAGCCTGTCTG 226324 Query 18800 CTACAAATTTAATATATGTGTTCATCATATCA--------CAATTCATTCCTATTAATTT 18851 | ||||||| | | ||| || || ||| || ||||| || || | ||| Sbjct 226323 CCACAAATTCAGT----GTGGCCACCACGTCATTAAAGTGCAGTTCATCCCAATGAGTTT 226268 Query 18852 AACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGA 18911 ||||| | || || | || | || || |||| | || |||| ||||| || | Sbjct 226267 CACAGGCAAAGCCTCCATGAGGAGCTCCTGCCCTATCCTCACAGCCT-TGATA--ATGGT 226211 Query 18912 TACA---ACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | | ||||| | || || || || || || || ||||||| ||| ||||| Sbjct 226210 TTCCTTTACTCTCTGCTCTGATGGTTTGTGTACCAGGTGCTTGAACATCAGACAGGCAAA 226151 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 ||||| || | ||||| ||||| || || | |||||| |||||||| | || ||||| Sbjct 226150 GTCACAGTGCAAACCCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCGGGCAT 226091 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 |||||||| ||| || | ||||||||| || ||||| || ||||||||||| || ||||| Sbjct 226090 CAGTCCTCATTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTC 226031 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 || ||||||||| | | | ||||||||| ||| || || | ||| Sbjct 226030 CAC-AATGCAAAAGCTGCAACACGTTCTCCATATGCAGCTTC-TTGT------CCCAACG 225979 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 || ||||| ||||||||| || ||||| ||||| || || || |||||| ||| | Sbjct 225978 CAAGGCCCAGTCAGCCTTC---TTCACACAAGGCATCGTTTCAATGACATTAAAGAGAAA 225922 Query 19209 CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATG 19268 | || | | ||||||| ||| || || | | ||||||| |||| ||| | Sbjct 225921 TTCCCTTTCTTTGGAATCTTTA----ATGTGTCAATAAGAAGACTGTACGTTTCGGAACG 225866 Query 19269 AATA----TTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTA 19324 ||| ||||| | || | || | || || ||||| | ||||| || || | | Sbjct 225865 TATAAAAGTTTTCCAAGGCAAGTTGGAGGCCATAGAAACAGCGGGCTTCCGTAATTTAAA 225806 Query 19325 CTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAA 19384 ||| | |||| || ||||| |||||||| ||||| |||||||| |||||||| | Sbjct 225805 ATTCTTGGCTGAATCACTCCACCAAGTTTTCATTTACTATGCCATCACTCGCTGCAAAGA 225746 Query 19385 ATGCTAATACATGTTTAATAAAAT 19408 | || | ||||| ||||||| Sbjct 225745 AAGCCAGAACATGGGATATAAAAT 225722 >seq32167 Length=1788516 Score = 158 bits (174), Expect = 1e-33 Identities = 408/619 (66%), Gaps = 27/619 (4%) Strand=Plus/Plus Query 46968 TTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATAC 47027 || || || || | |||||||| ||||||||| || | | ||||| || |||||| Sbjct 592550 TTTTCCTTATCTAGAGTAAACTGGATTGGATTAGCTGCAGGTCTTGTT-GT---TAATAC 592605 Query 47028 ATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAA 47087 || |||||||||||||| |||| ||||| || |||||||| | | ||| ||| Sbjct 592606 ATCCCAGTCTTTAAACCCTGCTTCCAGCCATAAAAGTGCATACTGATGAGTTTGCCATAG 592665 Query 47088 CTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCA 47147 |||| || | ||| | || || ||||| || || |||||||| || |||||||| | Sbjct 592666 TTAGGCTCAGTGATACGGATGTTCAGAGACTGGCTTTGATCAATGAAAGCACCTCTCTTG 592725 Query 47148 GCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTA 47207 | |||| | | | | | || | || ||| | || || ||||||| || || Sbjct 592726 AATACCATTTTGAGGACAGTTTTCTGAGAGATTTCCTACACAGTCTTATAAAGCTGATTC 592785 Query 47208 ATGTCTTCTGGGAGATTAG---TATTTTGAATAGATCCTCCgttttctataat------- 47257 | ||| || || | | | | || || ||| |||| | | | ||| | Sbjct 592786 AGGTCATCAGGAATTTCTGATATGTTCTGGATAAATCCATTGCATGCAATACTCTGGGTT 592845 Query 47258 ----tttgttttttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGAT 47313 ||| |||||||| || || | ||| || | | | ||| ||| ||| | Sbjct 592846 TTTGTTTTTTTTTTAAATCTCTTCATTCAAGATTCC----AATAAATCTTTCAGTAAG-T 592900 Query 47314 GAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTAT 47373 |||||| ||||| ||||||||||| | | ||||| | | | || || || |||| Sbjct 592901 GAGGATATACAATCTGAAATTCTCCTAACAAAACTCTTCAAGTGTGGATGTTGCTGGTAT 592960 Query 47374 ATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATG 47433 | |||| ||||| |||||||| || | ||| ||||||||||| || |||||||| | Sbjct 592961 AACGTTCAATAGACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCAGGG 593020 Query 47434 CAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAAT 47493 ||| | ||| || ||||||| ||||| ||| |||| | || || | Sbjct 593021 CAATAAGTAAACTGTTTCTTATACCATACTTTGCAATCT--GCCTTGAGAGGCTTTCAGT 593078 Query 47494 CCCAAAGATCTGATGGAA-CAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATC 47552 |||| || |||| ||||| |||||||| | |||||| |||||||| ||||| ||| Sbjct 593079 CCCACAGCTCTG-TGGAAGTGACATTCCACACATCATACTGAAGAATCCCTTTGTTTACT 593137 Query 47553 GGAGAACCATTATATGTTT 47571 ||| | | || || |||| Sbjct 593138 GGAAAGACCTTGTAAGTTT 593156 >seq30635 Length=1530594 Score = 129 bits (142), Expect = 7e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || |||| |||||| ||||| || | |||||||| || |||||||| ||| Sbjct 527667 TCATCTCTGCTGATCAGTTCATTTGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCTTT 527608 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||| ||||||| |||||||||||| |||||||| || |||||||| || ||||| || Sbjct 527607 AGCCAAAATATAGCAGCAAATGATCCGGAAAAGAAAATTCCTTCTACAGCAGCAAAGGCC 527548 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 527547 ACCACTCTTTCCCC 527534 >seq26070 Length=15207027 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | ||||| |||||||| | ||||||||||||||||| ||| | Sbjct 5605345 CCTCATCTCTACTGATAAGCTCATTGGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCT 5605404 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||| || ||||| || ||||||||||| || ||||| || || ||||||| Sbjct 5605405 TGAGCCAAAATATTGATGCAAAGGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 5605464 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 5605465 CTACAACACGTTCTCC 5605480 Score = 96.9 bits (106), Expect = 4e-15 Identities = 112/149 (75%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | |||||||||||| | || || ||| |||||||| Sbjct 5603743 TTAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTG--TCGGACTTGACATCACTCCCATC 5603800 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | |||||||| | ||||| || |||||||| || || || || || | ||| ||| | Sbjct 5603801 CTCTGATATTCCCCTACTCTCTTCTCAAAGAAGTTGGTCTTCCCTTCCAGTGAAATATTT 5603860 Query 18730 TCCATAAAATCAAATGGATTTTTTACATT 18758 ||||| || ||||||||||||| ||| || Sbjct 5603861 TCCATGAAGTCAAATGGATTTTCTACTTT 5603889 >seq29155 Length=1778819 Score = 102 bits (112), Expect = 9e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| ||||| ||||||||||| || | ||| ||| ||||||| | |||||| || | Sbjct 1094720 TCCAGCCATAAAAATGCATACTGGTGAGTTTGCCATAGTTAGGTTCAGCAATATGGATGT 1094661 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | ||||| || || |||||||| || |||||||| || |||||||| | | || | Sbjct 1094660 TTAGAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATTTTGAGAACAGTTT 1094601 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || || ||||||| ||| || | ||| || || Sbjct 1094600 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 1094552 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | || || ||||| || || ||||| || || Sbjct 1091677 TGAAATTCTCCCGACAAAACTCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATGGAC 1091618 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | ||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 1091617 TCATTATTCCCTAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAACTG 1091558 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 1091557 TTTCTTATACCATA 1091544 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175 |||||||||||||||||| || || | || | ||| | |||||||||||||| ||||| Sbjct 1083911 ATATAACTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACA 1083852 Query 48176 CATCAATGACCAATCCT 48192 |||||| |||||||||| Sbjct 1083851 CATCAAAGACCAATCCT 1083835 >seq2702 Length=368809 Score = 96.9 bits (106), Expect = 4e-15 Identities = 360/565 (64%), Gaps = 52/565 (9%) Strand=Plus/Plus Query 18616 AAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATTTT-T 18672 || ||| ||||||| | |||||||||||| || || | ||| |||||||| | | Sbjct 317127 AAGTCAGCATCCAAGGTGAAAGAATTCTCTG--TTGGATCTGACATCACTCCCATCCTCT 317184 Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 |||||||| | ||||| || ||||||||||| || || || || | ||| ||| |||| Sbjct 317185 TGATATTCACCTACTCTCTTCTCAAAGAAATT-GTCTTCCCTTCCAGTGAAATATTTTCC 317243 Query 18733 ATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGT 18792 || || ||||||||||||| ||| | | || | || || | | | | | || Sbjct 317244 ATGAAGTCAAATGGATTTTCTACTCTGAAAATCCTGTTAAAGCACAGCTGGAGCATAAGC 317303 Query 18793 CTATCCGCTACAAATTTA--------ATAT---ATGTG--------TTCATCATATCACA 18833 || || || ||||||| | | || ||||| ||||| | | ||| Sbjct 317304 CTGTCAGCCACAAATTCATCCTCCACAAATTCAATGTGGCTGCTGCTTCATTAAAATACA 317363 Query 18834 ATTCATTCCTATTAATTTAACAGGTAGTGCATCTGT-AAGAAATTCTTGTTCTATATTTA 18892 ||||| || || | |||| | || | ||| ||||| || | ||| | | Sbjct 317364 GTTCATCCCAATGAGCCACACAGACAAGGCCTTTGTGAAGAA----CTGCTGTATGCTCA 317419 Query 18893 CTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAA 18952 | || | | || || | ||||| | || | || || || || || || | Sbjct 317420 CAGCATTGGTAATTATTTCTTTTACTCTCTGCTCTTATGGTTTGTGTACCAGGTGCTTGA 317479 Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 |||||| ||| ||||| ||||| |||| ||||| ||||| || || | || || |||| Sbjct 317480 ACATCAGACAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTGATAAGCTCTTTGGAAA 317539 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAG 19072 ||| ||| || | |||||| | || ||||| || |||| Sbjct 317540 ATG----------------------TTTCTTGAGCCAGAACAGTGATGCAAAAGAACCAG 317577 Query 19073 AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCAT 19132 ||||||| || ||||| || || |||||||| || | ||||||||| |||| || | Sbjct 317578 AAAAGAAGATTCCTTCGACAGCAGCAAAAGCTACAACATGTTCTCCATAGGTAGCTTCTT 317637 Query 19133 TATTATGAATCCATTTCAGTGCCCA 19157 | | |||||| | ||| ||||| Sbjct 317638 TGTCCCCAATCCAATGCAGGGCCCA 317662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561019882832640