Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq31371 159 3e-33 seq33507 113 4e-19 seq10252 98.7 8e-15 seq4665 91.5 1e-12 seq33490 87.8 1e-11 seq15461 87.8 1e-11 >seq31371 Length=817987 Score = 159 bits (176), Expect = 3e-33 Identities = 392/588 (67%), Gaps = 10/588 (2%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||||||||| || || | || ||||| || || || ||||| | || |||| || Sbjct 504061 AGCTATAGGCATCGACCTGGGCACCACCTACTCATGCGTGGGTGTGTTCCAGCATGGCAA 504120 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || || || ||||||||||| || || ||| | || || || ||||| | ||||| Sbjct 504121 GGTGGAGATCATTGCCAATGACCAGGGCAACCGCACGACCCCCAGCTATGTGGCCTTCAC 504180 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTAC 550167 || || || | | |||| || || || || | || ||||| || ||||| Sbjct 504181 CGACACAGAGCGCCTGATTGGAGACGCGGCCAAGAACCAGGTAGCCA-TG--AATCCCCA 504237 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227 || ||| |||||||||| |||||| | ||||| || | ||||| ||| | ||| || Sbjct 504238 GAACACTGTTTTTGATGCCAAACGTCTGATTGGCAGGAAGTTTAACGATCCTGTTGTGCA 504297 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA--TATT 550285 | | |||||||| | |||||| || ||| | | |||| || || || | || | Sbjct 504298 GTCCGATATGAAACTTTGGCCATTTCAAGTGATCAATGAAGGAGGCAAGCCCAAGGTACT 504357 Query 550286 GAAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTT 550345 | | | || | |||| | ||| || | || || |||| || || ||||| Sbjct 504358 GGTG-TCCT-ACAAAGGGGAGGAGAAAGCTTTCTACCCTGAGGAAATCTCTTCCATGGTG 504415 Query 550346 TTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTA 550405 | | || ||||| | || || |||||| | || || | || || |||| || Sbjct 504416 CTGACAAAGATGAAGGAGACTGCAGAGGCTTTTTTGGGCCACAATGTCACCAATGCTGTC 504475 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 || ||||| ||||| ||||| |||||||| ||||| || || || || || || || Sbjct 504476 ATCACTGTGCCAGCCTATTTCAATGACTCTCAACGCCAGGCCACCAAGGACGCAGGTGTG 504535 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 ||||| ||||| ||||| || | || ||||||||||| || |||||||| | || || Sbjct 504536 ATTGCCGGACTCAATGTGCTGAGAATCATCAATGAACCCACAGCTGCTGCCATCGCCTAC 504595 Query 550526 GGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 || || |||||| | | ||| | |||| |||||||||||| Sbjct 504596 GGGCTAGATAAAGGAGGTCACGGAGAGCGGCATGTCCTCATCTTTGAT 504643 >seq33507 Length=5509411 Score = 113 bits (124), Expect = 4e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| | ||||| | || || ||||| || || ||||||||||| || || || || Sbjct 4634481 GTTACTAACGCAGTGGTCACAGTGCCAGCTTACTTCAATGACTCACAGCGGCAGGCAACC 4634422 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| || ||||| || ||||| ||| | |||||||| ||||| |||||| Sbjct 4634421 AAAGATGCTGGAACCATCGCTGGCCTCAATGTACTTAGAATTATCAACGAACCAACTGCT 4634362 Query 550511 GCTGCACTTGCATATGG 550527 || ||| |||| ||||| Sbjct 4634361 GCGGCAATTGCTTATGG 4634345 >seq10252 Length=5655956 Score = 98.7 bits (108), Expect = 8e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 563263 AGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322 ||| |||||||||||||| || || || |||||| |||| | ||||| | ||| Sbjct 4525589 AGTGCAAGATGAAGGGTAGACTCCTTTTGAACATTGTAGTCAGACAAAGTTCGTCCATCC 4525648 Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382 || || || || || ||||| || || ||||||||||||||||||||||||| ||||| Sbjct 4525649 TCCAGCTGCTTACCAGCAAAGATCAGCTTTTGCTGATCAGGAGGAATTCCTTCCTTATCC 4525708 Query 563383 TGAATTTTTTGTTTTAC 563399 || || || |||||| Sbjct 4525709 TGGATCTTGGCTTTTAC 4525725 >seq4665 Length=8212873 Score = 91.5 bits (100), Expect = 1e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | ||||||||||||||||| ||||| | ||| | ||||| || Sbjct 2941233 GTTACCCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAAAGGCAAGCAACC 2941174 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 ||||||||||| |||||||||||| ||||| | | || ||||| || || Sbjct 2941173 AAAGATGCTGGCACTATTGCTGGACTGAATGTCATGAGGATCATCAACGAGCC 2941121 Score = 89.7 bits (98), Expect = 4e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 552452 AGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTAT 552511 ||| ||| || || || ||||| ||| ||| || ||||| ||| || | || || Sbjct 2939481 AGGTGAACGACCCTTGACAAAAGACAATCATCTTCTGGGTACATTTGATCTGACTGGAAT 2939422 Query 552512 TCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGG 552571 ||||||||||||||||||||| || ||||| ||||| || || || || |||| ||||| Sbjct 2939421 TCCTCCTGCTCCTCGTGGAGTGCCCCAAATAGAAGTCACCTTTGAGATAGATGTGAATGG 2939362 Query 552572 AATTTTGAATGTGACTGCT 552590 ||| || ||||| ||| Sbjct 2939361 CATTCTGCGAGTGACAGCT 2939343 >seq33490 Length=7594977 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/136 (75%), Gaps = 5/136 (4%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 |||||||||||||| ||| |||| || ||||| |||| | ||||| | ||| | Sbjct 4306981 ACAAGATGAAGGGTGGACTCCTTTTG---ATGTTGTAGTCAGACAAAGTTCATCCATCCT 4307037 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | | || || || ||||| || || || ||||||||||||||||||||||| ||||| | Sbjct 4307038 CCAACTGCTTACCAGCAAAGATCAGCCTGTGCTGATCAGGAGGAATTCCTTCCTTATCCT 4307097 Query 563384 GAATTTTTTGTTTTAC 563399 | || || |||||| Sbjct 4307098 GGATCTTGGCTTTTAC 4307113 >seq15461 Length=7213747 Score = 87.8 bits (96), Expect = 1e-11 Identities = 101/134 (75%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 563268 AAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 |||||||||||| ||| ||||| ||| ||||| |||| | ||||| | ||| || Sbjct 6276395 AAGATGAAGGGTGGACTCCCTTTG--AATGTTGTAGTCAGACAAAGTTCATCCATCCTCC 6276338 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 | || || | ||||| || || ||||||||||||||||||||| |||| ||||| || Sbjct 6276337 AACTGCTTATCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTTCTTCCTTATCCTGG 6276278 Query 563386 ATTTTTTGTTTTAC 563399 || || |||||| Sbjct 6276277 ATCTTGGCTTTTAC 6276264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4021100170178240