Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq31301 82.4 1e-10 seq15910 82.4 1e-10 >seq31301 Length=34915 Score = 82.4 bits (90), Expect = 1e-10 Identities = 123/174 (71%), Gaps = 8/174 (5%) Strand=Plus/Plus Query 14526 TCCCACTTCCTTTTTGTTATTTGTGCGGCCATATCTGTCGCAGTCCAAGACCGTAGATCT 14585 ||||||||||| | || || || || ||||| || | |||| |||| || || || || Sbjct 3704 TCCCACTTCCTCCTGGTGATCTGAGCCGCCATGTCCGCCGCAATCCAGGAGCGCAGGTCG 3763 Query 14586 TCATTTAGACTGAAATAATCTTTACCGTCGTAAGCGTACTGCTCATAACCACGAATGAAA 14645 | || ||| ||| |||||||| |||||||| ||| |||| || || || | ||| Sbjct 3764 TAGTTCAGAGTGATGTAATCTTTGCCGTCGTAGGCGAACTGAATGTACCCGCGGAGGAAG 3823 Query 14646 CTTCCAT----TTTCCCAGACATCACAGCCATACATTCGCTGAATCGTGTGAGA 14695 | ||| | ||| |||||||||||| |||| | ||| | |||||||| Sbjct 3824 CGTCCGTGGGAATTC----ACATCACAGCCAGACATCCTCTGGAAGGTGTGAGA 3873 >seq15910 Length=20191 Score = 82.4 bits (90), Expect = 1e-10 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 14526 TCCCACTTCCTTTTTGTTATTTGTGCGGCCATATCTGTCGCAGTCCAAGACCGTAGATCT 14585 ||||||||||| || || || || || ||||| || | | | |||| || || || || Sbjct 1482 TCCCACTTCCTCTTGGTGATCTGAGCCGCCATGTCCGCCACGATCCAGGAGCGCAGGTCC 1541 Query 14586 TCATTTAGACTGAAATAATCTTTACCGTCGTAAGCGTACTGCTCATAACCACG 14638 || || ||| ||| |||||||| |||||||| ||| |||||||||| || || Sbjct 1542 TCGTTCAGAGTGATGTAATCTTTGCCGTCGTAGGCGAACTGCTCATATCCCCG 1594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628064152584960