Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq14035 163 3e-35 seq30635 120 4e-22 seq26070 111 2e-19 seq2702 95.1 1e-14 >seq14035 Length=1410301 Score = 163 bits (180), Expect = 3e-35 Identities = 326/475 (69%), Gaps = 21/475 (4%) Strand=Plus/Minus Query 37164 TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTA 37223 || |||| | ||| ||||| ||||| || ||||| |||||||| || || | |||||| Sbjct 226170 TTGAACATCAGACAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTGATAAGTTCATTG 226111 Query 37224 GAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT 37283 ||||| || | || ||||| | |||| ||| || | ||| ||||||| ||||||||| Sbjct 226110 GAAAATGTGAGGCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATTGATGCAAAAGAA 226051 Query 37284 CCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA 37343 ||||||||||| || ||||| || |||||| ||| ||| |||| || | | | Sbjct 226050 CCAGAAAAGAAGATTCCTTCCAC-AATGCAAAAGCTGCAACACGTTCTCCATATGCAG-C 225993 Query 37344 CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTT 37403 | | || || | | | ||| || ||||| || ||||| || ||| Sbjct 225992 TTCTTGTCCCAACGCAA------GGCCCAGTCAGCCTT---CTTCACACAAGGCATCGTT 225942 Query 37404 TCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGT 37463 ||||| | || |||||||| | |||||| |||| ||| | || ||||| || Sbjct 225941 TCAATGACATTAAAGAGAAATTCCCTTTCTTTGGAATCT-TTA---ATGTGTCAATAAGA 225886 Query 37464 AAACTATACATTTCAGAGTGAATA----TTTTCAATAGCTATCTGAAAACCATAAAAACA 37519 | ||| ||| |||| || | ||| ||||| | || | || | ||||| ||||| Sbjct 225885 AGACTGTACGTTTCGGAACGTATAAAAGTTTTCCAAGGCAAGTTGGAGGCCATAGAAACA 225826 Query 37520 CCTAGCTTCAGATAATTGAACA-TCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTA 37578 | ||||| | ||||| || | || | || | || | ||||||||||| |||| Sbjct 225825 GCGGGCTTCCG-TAATTTAAAATTCTTGGCTGAATCACTCCACCAAGTTTTCATTTACTA 225767 Query 37579 TCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 | |||||||| |||||||||||||| ||||||| |||||||| ||| || || Sbjct 225766 TGCCATCACTCGCTGCAAAGAAAGCCAGAACATGGGATATAAAATCTCTCTCTTC 225712 >seq30635 Length=1530594 Score = 120 bits (132), Expect = 4e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || |||| |||||| ||||| || | ||| ||||| | ||||||||| | Sbjct 527669 CTTCATCTCTGCTGATCAGTTCATTTGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 527610 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||||||||| || ||||| ||||| ||||||||||| ||||| || || ||||| | Sbjct 527609 TTAGCCAAAATATAGCAGCAAATGATCCGGAAAAGAAAATTCCTTCTACAGCAGCAAAGG 527550 Query 37318 CTAC 37321 | || Sbjct 527549 CCAC 527546 >seq26070 Length=15207027 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||||||| || | ||||| ||||| || | || ||||| | |||| ||| || Sbjct 5605347 TCATCTCTACTGATAAGCTCATTGGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCTTG 5605406 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||||||||||| |||||| || ||||||||||| || ||||| || || ||||| ||| Sbjct 5605407 AGCCAAAATATTGATGCAAAGGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCT 5605466 Query 37320 ACAAGACGT 37328 |||| |||| Sbjct 5605467 ACAACACGT 5605475 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | |||||||| || |||| |||| || || || || ||||| |||| Sbjct 5603788 CATCACTCCCATCCTCTGATATTCCCCTACTC-TCTTCTCAAAGAAGTTGGTCTTCCCTT 5603846 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||||||||| || ||||||||||| Sbjct 5603847 CCAGTGAAATATTTTCCATGAAGTCAAATGGATT 5603880 >seq2702 Length=368809 Score = 95.1 bits (104), Expect = 1e-14 Identities = 297/465 (64%), Gaps = 50/465 (11%) Strand=Plus/Plus Query 37164 TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTA 37223 || |||| | ||| ||||| ||||| |||||||| |||||||| || || | || || Sbjct 317476 TTGAACATCAGACAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTGATAAGCTCTTTG 317535 Query 37224 GAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT 37283 ||||| ||| | || | ||| || | || ||||||||| Sbjct 317536 GAAAATGTT----------------------TCTTGAGCCAGAACAGTGATGCAAAAGAA 317573 Query 37284 CCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA 37343 ||||||||||| || ||||| || || ||||| ||||||| | || || | || | Sbjct 317574 CCAGAAAAGAAGATTCCTTCGACAGCAGCAAAAGCTACAACATGTTCTCCATAGGTAG-- 317631 Query 37344 CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTT 37403 | | ||| | |||||| ||| | | || ||||| Sbjct 317632 ---------------CTTCTTTGTCCCCAATCC------AATGCAGGGCC--CAGTTGTT 317668 Query 37404 TCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGT 37463 ||||| || || |||||||| | |||| | |||| | || ||||| ||||| | Sbjct 317669 TCAATGGCATTGAAGAGAAATTCCCTTTCGTTGGAATCTTTAATGTAAGTGTCAATACGA 317728 Query 37464 AAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTA 37523 | ||||||||||||||| || | |||| || || || || || ||||| ||||| || Sbjct 317729 AGACTATACATTTCAGAATG-GCAATTTCCATGGCAATTTGGAAGCCATAGAAACA-GTA 317786 Query 37524 GCTTCAGATAA-TTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582 | || |||| |||||| || | || || ||||||||||| |||| || Sbjct 317787 GGTTTCCATAATTTGAACTTCTTGGCTGAATTGCTGCATCAAGTTTTCATTTACTAGGCC 317846 Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCT 37627 |||||| |||||||| ||| |||| || ||||| || ||| Sbjct 317847 ATCACTCACTGCAAAGGAAGTCAGAATATGAGATATAAGATATCT 317891 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTT-TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||||||| || |||| |||| ||| || ||||||| |||| Sbjct 317168 CATCACTCCCATCCTCTTGATATTCACCTACTC-TCTTCTCAAAGAAATTGTCTTCCCTT 317226 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||||||||| || ||||||||||| Sbjct 317227 CCAGTGAAATATTTTCCATGAAGTCAAATGGATT 317260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591169363895040