Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq15815 228 7e-55 seq10112 134 1e-26 seq5010 125 6e-24 seq1271 89.7 4e-13 seq31974 82.4 6e-11 >seq15815 Length=3425397 Score = 228 bits (252), Expect = 7e-55 Identities = 432/625 (69%), Gaps = 17/625 (3%) Strand=Plus/Plus Query 29767 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 29826 ||||| ||||| || || | || ||||||| | ||||| || || | ||||| |||||| Sbjct 2366396 GGAAAAGGTCTTGGTTCTCGCTGGAGCTGAATTTTCAGTGGCTCAATGTGATTCAGGTAA 2366455 Query 29827 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29886 || | || ||||||| | | ||||| || || | | || | |||| ||| || Sbjct 2366456 ACATATGCATCTCCCAAAATA-GTACAAAATCACCTGACTTCAGGTCTGTGATGTGTGCG 2366514 Query 29887 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 29946 |||||||| | || || | |||||||||||||| ||||| || || || ||| | | Sbjct 2366515 ATCATGTAGCTTAGCGGACA-TAGCTGGCGATGTTGAAGGGCACACCCAGGCCCGTACCT 2366573 Query 29947 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATG 30006 || ||||||||||| || || || || ||||| || | ||| || |||| || | | Sbjct 2366574 CCTGACCTCTGGTAAAGTTGGCAGGACAGCTCCCCATTCACCACATAGAACTAGCAGAGG 2366633 Query 30007 GTGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACG 30063 || || | || || ||||| |||| ||| ||||| ||||||||||| ||| Sbjct 2366634 ACTTGACAAGAAGCCAGCGCCATCAGAGG---AAGATCTTTTGGGTTCCAGGCACAC--- 2366687 Query 30064 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30123 ||||| | ||| || | |||| | ||||| || | | || ||||||| || Sbjct 2366688 ATGATTCTTCTG---TCAGTGTTGGTTTTGATGGTATCAATAACTTTCTGCAGCTTGTCT 2366744 Query 30124 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAC 30183 | || || ||||| || | ||| || |||| |||||||| |||||| ||||| Sbjct 2366745 GCTCCTTGACCTGAGTAATCAGAATCCATATCTTTGTAGTCTGCTCCAAAATGCATCCAC 2366804 Query 30184 TGGAACCCGTACACCGGTCCCAGGTCTCC-CTCTTCCCTGTGCTCGAAGCCC-CTCTTGT 30241 ||||| || || || || | |||||| || ||| || ||| ||| ||| ||| Sbjct 2366805 TGGAAACCATAAACTGGACTCAGGTCCCCTTTCTGCCGAGTG-GAGAATCCCTAGGCTGT 2366863 Query 30242 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 30301 ||| |||||| | ||| || ||||| |||||||| || ||||| | ||| || |||| Sbjct 2366864 CCAGAAAGTCCCGGGATCCATTGGCATCCCAGATTTTCTCCCCCCTGGAGGACAGTTCTT 2366923 Query 30302 TGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGA 30361 | | |||||||| || | | ||||| |||| |||||||| || ||||||| || | Sbjct 2366924 TAGCATTTGTGGATCCCTTAATAAACCATAGCAACTCCTCCAAAACACCCTTCCAGAATA 2366983 Query 30362 CCCTCTTGGTCGTGAGGAGGGGAAA 30386 | | |||| ||||| || ||||| Sbjct 2366984 CTCGTTTGGCTGTGAGCAGAGGAAA 2367008 >seq10112 Length=11852372 Score = 134 bits (148), Expect = 1e-26 Identities = 402/619 (65%), Gaps = 46/619 (7%) Strand=Plus/Plus Query 29767 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 29826 ||||| ||||| || || | || ||||||| | ||||| || | | | || |||||| Sbjct 4836216 GGAAAAGGTCTTGGTTCTCCCTGGAGCTGAATTTTCAGTGGCTAGATATAATTCAGGTAA 4836275 Query 29827 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29886 || | || ||||||| || || || || || || | | || || |||| ||| || Sbjct 4836276 ACACGTGCATCTCCCAAAGTATGTACGAAATCACCTGACTTCAGGCCTGTGATGTGTGCT 4836335 Query 29887 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 29946 |||||||| ||||| | | |||||| |||||| ||||| || || || ||||| || Sbjct 4836336 ATCATGTAGGTGAGTGGGGCATAGCTGCAGATGTTGAAGGGCACACCCAGGCCCATATCT 4836395 Query 29947 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATG 30006 || | || |||||| ||||| || ||| | Sbjct 4836396 CCTGCCCCCTGGTACAGCTGGCA---GAG------------------------------G 4836422 Query 30007 GTGTGGCACGGAGGAAGAGCCATGAGGCCCAAG-TCTTTGGGGTTCC-AGGCGCACACGA 30064 || ||||| ||||| | |||| | ||| ||||| |||| || |||| |||| || Sbjct 4836423 GTATGGCAAGGAGGTGGCACCATCGG----AAGATCTTTTGGGTCCCTAGGCACACATGA 4836478 Query 30065 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 30124 |||| | ||||| || |||| | |||||| || | || ||||| || || | Sbjct 4836479 TGATTCTTCTGTCATC---GTTGGTTTTGATGATATCAATCATTTTCTGCAGATGGTCTA 4836535 Query 30125 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACT 30184 | || || ||||| |||| ||| || |||| ||||| || ||||||||||||| Sbjct 4836536 CTCCTTGACCTGAGTAATCTGAATCCATATCTTTGTAGTCTGCCCC-AAATGCCTCCACT 4836594 Query 30185 GGAACCCGTACACCGGTCCCAGGTCTCCCT-CTTCCCTGTGCTCGAAGCCCCTCTTGTCC 30243 |||| | || || | |||| ||| || | || || ||| ||| ||| | ||| Sbjct 4836595 GGAAATCATAAACGGTGCCCAAGTCCCCTTCCTGCCGAGTG-GAGAATCCCAGGCTTTCC 4836653 Query 30244 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT- 30302 | ||||| ||| || ||| | |||||||| ||||| || | ||| | ||||| Sbjct 4836654 AGAAAGTTGGGGGAGCCATTGACATCCCAGATTTTTACTTCCCTAGGGGACTGTTCTTTA 4836713 Query 30303 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 30362 |||| || |||| | |||||||||| ||||| | || ||||||| || || Sbjct 4836714 CCAGTTGTGGGTCCCTTAAAAAAACCACAGCAACTCCTTTAAAACATCCTTCCAGAATAC 4836773 Query 30363 CCTCTTGGTCGTGAGGAGG 30381 | ||| | ||||| ||| Sbjct 4836774 TCATTTGATTGTGAGCAGG 4836792 >seq5010 Length=4126613 Score = 125 bits (138), Expect = 6e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||| || | |||||||||||||| ||||| Sbjct 1433164 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 1433223 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || ||||| || || ||||||||||| ||||| || || ||||| || | | Sbjct 1433224 ACACCAAGGCCCATATCTCCTGACCTCTGGTAAAGCTGGCAGGACAGCTCCCCATTCACC 1433283 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| ||||| || | || ||||| ||||| || ||||| || Sbjct 1433284 ACGTAGAACTGGCAGAGGGCATGGCAAGGAGGCAGTGCCATCAG 1433327 Score = 104 bits (114), Expect = 2e-17 Identities = 126/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| ||||| || ||||||||||||||||| || || || || |||||||| Sbjct 1439398 CATATCTTTGTAGTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAGGTC 1439457 Query 30210 TCCCTCTTCCC-TGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 || || |||| ||| ||| ||| |||||| |||||||| ||| || ||||| | Sbjct 1439458 CCCTTCCTCCCGAGTG-GAGAATCCCAGGCTGTCCAGAAAGTCTCGGGATCCATTGGCAT 1439516 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||||||| || || ||| | ||| || ||||| | ||||| || || Sbjct 1439517 CCCAGATTTTCACTCCCCTGGAGGACAGTTCTTTAGCATTTGTAGATCC 1439565 >seq1271 Length=1277762 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/191 (72%), Gaps = 11/191 (6%) Strand=Plus/Minus Query 112149 ATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCC 112208 |||||| || || ||||||||||| || || |||||||| ||||||| ||||| || || Sbjct 107836 ATTCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACC 107777 Query 112209 TCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCAAAGTCTCGC 112268 | |||||||| || | ||||| | | |||| || | || || | | || Sbjct 107776 TTGTACTGAAGAGGTTGTGGTCATTCTTTGGAAGTACTTGACCTCGTTCCTGA-----GC 107722 Query 112269 AGGATGCCACGGCA-GATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACACGGCCACG 112326 |||| |||| |||| |||| | ||| || |||||||||||| ||||| |||||| || Sbjct 107721 AGGA-GCCAGGGCAGGATC-CTGTTCTTGCCGATGCCCATGTTCTGG--GCACGGCAACA 107666 Query 112327 ATACCGTTCAG 112337 || | ||| || Sbjct 107665 ATGCAGTTTAG 107655 >seq31974 Length=1445934 Score = 82.4 bits (90), Expect = 6e-11 Identities = 167/241 (69%), Gaps = 9/241 (4%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| | || || || || ||||| | ||||| || ||| | | ||| | Sbjct 1042959 ATGAGCTCCTGGTGGAGGTTCCTTGAGCTCTCCACTGAGAACAGTGTTAGTGCGGTCCTT 1042900 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | |||| |||||| || || || |||||||| | || || ||||| ||||||| || Sbjct 1042899 TAATGGTCAATTCTTCTCAGGAATAGAGAACCAGGATTTCCTGCCCATGATCACCAGATT 1042840 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 112259 ||| || ||| |||||||| || ||||| | | |||| || || ||| || Sbjct 1042839 CTGTTTACCTTCTACTGAAGAGGTTATGGTCATTCTTTGGAAGTACTTGAA--CTTGGCC 1042782 Query 112260 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGC-CCATG-TCT-GGACA 112316 | |||| || ||| ||||||||||| || || | ||||| ||||| ||| ||||| Sbjct 1042781 GTG-CTCGGGGG---CCAGGGCAGATCTCCATTCTTACTGATGCTCCATGTTCTGGGACA 1042726 Query 112317 C 112317 | Sbjct 1042725 C 1042725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407845815335648