Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq10252 111 1e-19 seq27460 89.7 4e-13 >seq10252 Length=5655956 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||||||||| || ||||| | |||||| || | | ||||| |||| |||| || Sbjct 4525597 ATGAAGGGTAGACTCCTTTTGAACATTGTAGTCAGACAAAGTTCGTCCATCCTCCAGCTG 4525656 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| |||| || ||||| || ||||| ||||| ||||| || || || Sbjct 4525657 CTTACCAGCAAAGATCAGCTTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 4525716 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||||||| |||||| | |||| | | ||| || || || |||| || || || | Sbjct 4525717 GGCTTTTACATTTTCTATAATGTCCAAAGGTTCAACCTCGAGTGTGATGGTCTTTCCCAT 4525776 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || |||| || |||||||| Sbjct 4525777 AAGGGTCTTTATGAAAATCTGCAT 4525800 >seq27460 Length=7433090 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 || |||||| || || || || || ||||| || ||||| |||| |||| || Sbjct 5710093 ATAAAGGGTGGACTCCTTCTGAATGTTGTAGTC------AGTTCATCCATCTTCCAGCTG 5710146 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| |||| | || ||||| | ||||||||||| ||| |||| || || Sbjct 5710147 CTTGCCAGCAAAGATCAGCCTTTGCTGATCAGAAGGAATGCCTTCCTTAGCTTGGATCTT 5710206 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||||||| ||||| |||||| || ||||| || || |||| || || || || Sbjct 5710207 GGCTTTTACATTTTCTGTAGTGTCCGAGGTTTCAGTCTCCAGTGTGATGGTCTTCCCTGT 5710266 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || ||||| || || || || Sbjct 5710267 AAGGGTCTTTACGAAAATATGTAT 5710290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395529921246432