Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq33490 89.7 4e-13 seq15461 86.0 5e-12 >seq33490 Length=7594977 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/216 (69%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 ||||| | ||| || ||| ||| |||||| | ||||| ||||| | | ||| | || Sbjct 4306978 AACACAAGATGAAGGGTGGACTCCTTTTGA-TGTTGTAGTCAGACAAAGTTCATCCATCC 4307036 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 |||||||||||||| ||||| ||||| | || ||||| | |||| || ||||| || Sbjct 4307037 TCCAACTGCTTACCAGCAAAGATCAGCCTGTGCTGATCAGGAGGAATTCCTTCCTTATCC 4307096 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 ||||| ||||||| | || | ||| | || |||| | | | || || Sbjct 4307097 TGGATCTTGGCTTTTACATTTTATATAGTGTATGAGGGTTCAACCTTGAGCATGATGGTC 4307156 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || | || |||||||||||||||||| || Sbjct 4307157 TTCCCTGTAAGGGTCTTTACAAAAATCTGCATCCTG 4307192 >seq15461 Length=7213747 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| ||||| | ||| || ||| ||| ||||||| ||||| ||||| | | ||| Sbjct 6276406 AGCCTCAACAGAAGATGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGACAAAGTTCAT 6276347 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||||||||||| | ||||| ||||| | || ||||| | |||| | ||| Sbjct 6276346 CCATCCTCCAACTGCTTATCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTTCTTCC 6276287 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| ||||||| | | || ||||| | || |||| | | | Sbjct 6276286 TTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTTGAGCCTG 6276227 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || | ||| | | || ||||| |||||||||||| || Sbjct 6276226 ATGGTCTGCCCCATAAGGGTCTTTACTAAAATCTGCATCATG 6276185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380218096489248