Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq30820 187 5e-42 seq33488 145 1e-29 seq14035 122 2e-22 seq29155 91.5 3e-13 >seq30820 Length=2397089 Score = 187 bits (206), Expect = 5e-42 Identities = 187/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||||||||| |||||||| || Sbjct 2079560 AGCAGCTGGCAGCCGTTGCTTACGTGAGTCATGACCTTCTGTTTGAGCTGGGCCACTTGC 2079619 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| |||| | || ||| | ||||| || ||||| || | |||||| |||||| Sbjct 2079620 TCCCGGAGAAGGCCGGCAGTACTCGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCACC 2079679 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| |||||||||||||| |||| Sbjct 2079680 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCATTTGGTGGCGGCCAGC 2079739 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 | ||| || |||||||| || ||| | ||||| || |||||||| ||||||| ||| || Sbjct 2079740 CTGTTTCGCAGTCTCTTGCGCTCCACTTTGATACGCTCCTGGTCTTCCATGTTGATGGGG 2079799 Query 241625 GAC 241627 ||| Sbjct 2079800 GAC 2079802 Score = 84.2 bits (92), Expect = 4e-11 Identities = 87/115 (76%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| |||||||| | ||||| |||| | || ||| | ||||| ||||||| Sbjct 2079597 TCTGTTTGAGCTGGGCCACTTGCTCCCGGAGAAGGCCGGCAGTACTCGACAGCCCCGCGT 2079656 Query 238986 TATCAGACTTGAG--------CATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | |||||| | || |||||||| ||||||||||| |||||||| Sbjct 2079657 TCTCGGCCTTGAGTGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 2079711 >seq33488 Length=2929059 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||||||||| || |||||||| || ||||| | | ||||| | ||| Sbjct 1373406 AGGACTTTCTGTTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTGGCGGTGGACGCCAGC 1373347 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| ||| |||||||||||||| |||| |||||| ||||| Sbjct 1373346 TCGGTGTTCTGGCTCTTGAGAGTCTTGACTTTCTCCTCCAGGCGCGAGATGCGCTCCAGC 1373287 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || ||||| || || |||||| Sbjct 1373286 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCTCTTGCGCTCTGCCTTG 1373227 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 1373226 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 1373194 >seq14035 Length=1410301 Score = 122 bits (134), Expect = 2e-22 Identities = 350/530 (66%), Gaps = 20/530 (4%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 || || || || ||||| || ||||||||||| |||||||| |||| || || || ||| Sbjct 226450 TGATATTCACCTACTCTCTTTTCAAAGAAGTTGGTCTTCCCTTCCAGTGAAATATTTTCC 226391 Query 47900 ATGAAGAGGAAGGGGTTGGGTG-TGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 |||||| || || || | | | | | || || | | ||||| || || || Sbjct 226390 ATGAAGTCAAATGGATTTTCTACTCTGAAAATCCTGT-TAAAGCCCAGCTCGAGCATAAG 226332 Query 47959 GTGATCCGCGACGTACTCGATGT----ATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014 || || || | || ||| | | ||| | ||| |||||| || |||| Sbjct 226331 CCTGTCTGCCACAAATTCAGTGTGGCCACCACGTCATTAAAGTGCAGTTCATCCCAATGA 226272 Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 | ||| |||||||||| |||| | ||||| | ||||| ||| || | | Sbjct 226271 GTTTCACAGGCAAAGCCTCCATGAGGAGCTCCTGCCCTATCCTCACAGCCTTGATAATGG 226212 Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 | | ||| || | |||||| ||||||| |||||||||| | | || |||| Sbjct 226211 TTTCCTTTACTCTCTGCTCTGATGGTTTGTGTACCAGGTGCTTGA---ACATCAGACAGG 226155 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 ||||||| | |||||| || || || | |||||| || | ||||| || ||| || | Sbjct 226154 CAAAGTCACAGTGCAAACCCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCGG 226095 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || | | ||||||||||| |||| || ||||| ||||| |||||||| | Sbjct 226094 GCATCAGTCCTCATTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTC 226035 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 | ||||| || || || | | | ||||| | | ||| |||||||| | Sbjct 226034 CTTCCAC-AATGCAAAAGCTGCAACACGTTCTCCATATGCAGC-TTCTTGTC-----CCA 225982 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATG 48364 | | ||| |||||||| ||||||||| | || |||||||| || ||| Sbjct 225981 ACGCAAG-GCCCAGTCAGCCTTCTTC---ACACAAGGCATCGTTTCAATG 225936 >seq29155 Length=1778819 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| | || || ||||||||||| |||||| |||||| ||||||||||| ||| Sbjct 1086491 GTATACTCTACTATTTCTGTGCACAGGTTACTGCATTTGATGGTTCCCAGGTTCTGCTGG 1086432 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| ||| ||||| |||||||||||||| |||| || |||||| ||| Sbjct 1086431 TTGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACCAGTCTCTGTCTGA 1086372 Query 213648 GAC 213650 ||| Sbjct 1086371 GAC 1086369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 929728234659840