Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq14035 104 4e-17 >seq14035 Length=1410301 Score = 104 bits (114), Expect = 4e-17 Identities = 301/468 (64%), Gaps = 16/468 (3%) Strand=Plus/Plus Query 25864 GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGT 25923 ||| | | ||| || || | | ||| ||||| |||||| || ||||| || ||| Sbjct 225993 GCTGCATATGGAGAACGTGTTGCAGCTTTTGCAT-TGTGGAAGGAATCTTCTTTTCTGGT 226051 Query 25924 TCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTC 25982 || ||||| | || |||||||||||| | | | |||| |||||||| || ||||| Sbjct 226052 TCTTTTGCATCAATATTCTGGCTCAAG-AAATGAGGACTGATGCCCGGCCTCACATTTTC 226110 Query 25983 CAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 ||| || || |||||||| || |||||| | ||| | || |||||||| ||| | | || Sbjct 226111 CAATGAACTTATCAGCAGAGATGAGGGTTTGCACTGTGACTTTGCCTGTCTGATGTTCAA 226170 Query 26043 GGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGT 26102 | ||| || | |||||||| || | ||| || | | ||| | ||||||| Sbjct 226171 G---CACCTGGTACACAAACCATCAGAGCAGAGAGTAAAGGAAACCATTATCAAGGCTGT 226227 Query 26103 GGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAA 26162 | ||| | | ||||| | | | || |||||| Sbjct 226228 GAGGATAGGGCAGGAGCTCCTCATGGAGGCTTTGCCTGTGAAACTCATTGGGATGAACTG 226287 Query 26163 CAGACTCATGA-------GCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGC 26215 || | |||| ||| ||| ||| | |||||| ||| || || | ||| Sbjct 226288 CACTTTAATGACGTGGTGGCC---ACACTGAATTTGTGGCAGACAGGCTTATGCTCGAGC 226344 Query 26216 TGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGT 26275 |||| | ||| | | ||| || || || ||||| |||||||| || || Sbjct 226345 TGGGCTTTAACAGGATTTTCAGAGTAGAAAATCCATTTGACTTCATGGAAAATATTTCAC 226404 Query 26276 TGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCAAG 26323 ||||||||||||||||||||||||||||||| || || || ||||||| Sbjct 226405 TGGAAGGGAAGACCAACTTCTTTGAAAAGAGAGTAGGTGAATATCAAG 226452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927045441853440