Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_019559.1 Length=202946 Score E Sequences producing significant alignments: (Bits) Value seq23497 91.5 2e-13 seq22040 82.4 1e-10 seq18521 82.4 1e-10 >seq23497 Length=542803 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2656 AGAATTTCTTAAGCAGATACAAAGGAAATTTCGATTACTGGATCGGCATACACAGAGAAT 2715 |||||||| | || ||||| ||||| || ||| ||||||||||| | |||||||||| Sbjct 495678 AGAATTTCCTGAGGAGATATAAAGGCCCTTCTGATCACTGGATCGGCCTGCACAGAGAAT 495619 Query 2716 CATCAGAACATCCGTGGAAATGGGCGGATAATACCACATACAACTACTCGTAAGTCTG 2773 |||||| ||| || ||||| ||| | || || || ||||||| || |||| || || Sbjct 495618 CATCAGGACAGCCTTGGAAGTGGACAGACAACACTGAATACAACAACACGTATGTTTG 495561 >seq22040 Length=174446 Score = 82.4 bits (90), Expect = 1e-10 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2656 AGAATTTCTTAAGCAGATACAAAGGAAATTTCGATTACTGGATCGGCATACACAGAGAAT 2715 || ||||| | || ||||| ||||| || ||| ||||||||||| | ||||||||| Sbjct 116566 AGGATTTCCTGAGGAGATATAAAGGCCCTTCTGATCACTGGATCGGCCTGTACAGAGAAT 116507 Query 2716 CATCAGAACATCCGTGGAAATGGGCGGATAATACCACATACAACTACTCGTAAGTCTG 2773 |||||| ||| || ||||| ||| | || || || ||||||| || |||| || || Sbjct 116506 CATCAGGACAGCCTTGGAAGTGGACAGACAACACTGAATACAACAACACGTATGTTTG 116449 >seq18521 Length=10679 Score = 82.4 bits (90), Expect = 1e-10 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2656 AGAATTTCTTAAGCAGATACAAAGGAAATTTCGATTACTGGATCGGCATACACAGAGAAT 2715 || ||||| | || ||||| ||||| || ||| ||||||||||| | ||||||||| Sbjct 8074 AGGATTTCCTGAGGAGATATAAAGGCCCTTCTGATCACTGGATCGGCCTGTACAGAGAAT 8133 Query 2716 CATCAGAACATCCGTGGAAATGGGCGGATAATACCACATACAACTACTCGTAAGT 2770 |||||| ||| || ||||| ||| | || || || ||||||| || |||| || Sbjct 8134 CATCAGGACAGCCTTGGAAGTGGACAGACAACACTGAATACAACAACACGTATGT 8188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 648041377589760