Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq33507 100 2e-15 seq10252 98.7 6e-15 seq8614 93.3 3e-13 seq28653 91.5 1e-12 >seq33507 Length=5509411 Score = 100 bits (110), Expect = 2e-15 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||||||||||||| | || || ||||| ||| ||||| | ||| | || ||| Sbjct 4633064 TGAAGGTGAAAGAGCCATGACCAAGGATAACAACCTGCTTGGGAAGTTTGAGCTCACAGG 4633005 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 || || ||||| ||| |||| |||||||| || || || ||||| || |||||||| || Sbjct 4633004 CATACCCCCTGCACCCCGAGGTGTTCCTCAGATCGAGGTCACTTTCGACATTGATGCCAA 4632945 Query 476152 TGGTATTCTTAATGTTACTGCTTGTGATAA 476181 |||||| || |||||| ||||| ||||| Sbjct 4632944 TGGTATCCTCAATGTTTCTGCTGTAGATAA 4632915 Score = 93.3 bits (102), Expect = 3e-13 Identities = 223/330 (68%), Gaps = 8/330 (2%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 || || ||||| || |||||||| |||| || || || || | | | |||| || Sbjct 4634023 ACAGCCTGTGAGCGGGCTAAGCGCACTCTCTCCTCCAGCACCCAGGCCAGTATTGAGATT 4633964 Query 475556 GATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTACAAGGGCTAAATTTGAAGA 475614 |||||||| | ||| ||||| || || || ||| ||||| ||||| ||||||||| Sbjct 4633963 GATTCTCTCTATGAGGGAATCGACTTCTACACCTCC-ATTACTCGGGCTCGATTTGAAGA 4633905 Query 475615 TATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTC 475674 | | |||| | || | || | || || || ||| ||| || ||||| | Sbjct 4633904 GTTGAATGCTGACTTGTTCCGTGGCACCCTGGACCCTGTAGAAAAAGCCCTTCGAGATGC 4633845 Query 475675 TAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCC 475734 ||||| ||||| ||||| ||||||| |||||||| || || ||||| || | || || Sbjct 4633844 CAAACTAGACAAGTCACAGATCCATGATATTGTTCTGGTGGGTGGTTCCACCCGGATCCC 4633785 Query 475735 AAAAATAAGAGAAATGCTTT--CATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGT 475791 || || |||| |||| || | | || || || ||| | | ||| | || | Sbjct 4633784 CAAGATTC-AGAA--GCTTCTGCAAGACTTCTTCAACGGAAAAGAACTGAATAAGAGCAT 4633728 Query 475792 AAATCCTGATGAAGCTGTTGCATATGGAGC 475821 || || |||||||||||||| ||||| || Sbjct 4633727 TAACCCCGATGAAGCTGTTGCTTATGGTGC 4633698 >seq10252 Length=5655956 Score = 98.7 bits (108), Expect = 6e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| | ||| |||||||||| ||| || || |||||| || |||| | ||| Sbjct 4525579 ACGAAGTCTCAGTGCAAGATGAAGGGTAGACTCCTTTTGAACATTGTAGTCAGACAAAGT 4525638 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || ||| || || ||||| |||||||| || || ||| ||||||||||||||||| Sbjct 4525639 TCGTCCATCCTCCAGCTGCTTACCAGCAAAGATCAGCTTTTGCTGATCAGGAGGAATTCC 4525698 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATA 480707 |||||| || || ||||| ||| ||| ||| ||| Sbjct 4525699 TTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATA 4525735 >seq8614 Length=2925550 Score = 93.3 bits (102), Expect = 3e-13 Identities = 157/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 474381 ATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTT 474440 |||| |||||||||||||||||||||| ||| | ||| | || | |||| ||| || Sbjct 2883117 ATGGGAAAGTAGAAATAATTGCCAATGGCCACAGAAATGGCACCATACCAAGCTATTTTG 2883176 Query 474441 CTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATC 474500 | |||||||| || ||| || | ||| ||||||||||| |||| | ||| | | | Sbjct 2883177 CCTTTACTGACACAGAATGACTGACTGGTGATGCTGCTAAGAATCAGGTTGC-CATGAAC 2883235 Query 474501 CTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTG 474560 || || || | |||||| | || | | ||||| | | ||||||||||| || Sbjct 2883236 ATG--AACACAGTGTTTGATTCCAATTGTCTAATTGGATGCAGGTTTGATGATACTGTTG 2883293 Query 474561 TCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTG 474605 | |||||| || || ||||| || | ||||| ||||| || Sbjct 2883294 CTTAGTCTGATTTGAAACACTGGCCCTTCATGGTGAGAAATGATG 2883338 >seq28653 Length=4296906 Score = 91.5 bits (100), Expect = 1e-12 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || || || |||||||| || || ||| ||||||||||||||||||||||| Sbjct 624362 ATCTTCCAGCTGTTTCCCAGCAAAGATCAGCTTTTGCTGATCAGGAGGAATTCCTTCCTT 624303 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTAT-CAGTGTGTGAAGTTTCAAGGGTAA 480735 || || ||||| ||| ||| ||| |||| | || || | || | || || || | Sbjct 624302 ATCCTGGATCTTGGCTTTTACATTTTCTGTAGTGTGCAAGGTTTCAA-TCTCGAGCGTGA 624244 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || || ||||| |||||||| || Sbjct 624243 TGGTCTTCCCTGTAAGGGTCTTTACGAAAATCTG 624210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3261531527416448