Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq7138 298 6e-76 seq131350 185 1e-41 seq22731 181 1e-40 seq121270 161 1e-34 seq16566 125 8e-24 >seq7138 Length=5562 Score = 298 bits (330), Expect = 6e-76 Identities = 673/1002 (67%), Gaps = 17/1002 (2%) Strand=Plus/Minus Query 160037 CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTC 160096 ||| | | |||| | |||||| || |||| ||| |||| ||| || |||||| ||| Sbjct 2624 CAGGGCTTTGTGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGGGGTCAACATCTGT 2565 Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || ||||| || || | ||||| || | || ||||| | || ||| || Sbjct 2564 GTCAAACTTATTGGCAAAAAAGTGGTGC---TTACGCAGCATCCATTTCAAGTCGCCAAC 2508 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 |||||| ||||| || || || | |||||| || |||| |||||||| | || || || Sbjct 2507 CCCGAAAACGCACACAGAGCGCACGTGCACCCCACTGCAGGGCGGGTAGGGCGCGCCCTT 2448 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 | || ||||||||| ||||||||||||| |||||||| || | || | |||||| || Sbjct 2447 GGAAACATCACCTTCGAAGTACTGCCACTTGACAAACCTAGCGACAGCATTCATGTCAGA 2388 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 ||| || || | | || | | || || || |||| || | || | ||| Sbjct 2387 CAAGTCATACTTATGGTTTGAGGAGAGTGAGCCAGGGACTTCGGGGATCCTTTGGATGGT 2328 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT 160396 |||||| |||| || ||||||||||| ||||| | | ||| |||||||||| ||| Sbjct 2327 GGCCCAGAGGTACTCATCGGGGCTGTATGTGTCTTGGGCCCACTCCATGAACTTCTGGAT 2268 Query 160397 -TAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGC 160455 | | || | || || | || || || | | |||||||| || |||| Sbjct 2267 GTCTTCATTCTCT-AGCACATAGCCCACATATTCCCTACTGGCCACAAAGTAGGCACTGC 2209 Query 160456 CGGAGAATATCGGTA---TGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACA 160512 | ||||| | || | || || |||| || |||||| || || ||||| || Sbjct 2208 CCGAGAAAAGGGGAAATCTGAGTGGAGGCCGC---TCTTTGACCAACCCTGTGTTTATCA 2152 Query 160513 CCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGC 160572 | ||| || || | || || | || |||||||| | || | | ||||| Sbjct 2151 GCTGTCCGTTAACAACAGCATGAC--TTTTTCCACCTTTCTTCTTTATTGGAGGGCATCT 2094 Query 160573 GTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGT 160632 || ||||| || |||| |||| || | | | || | | | ||||| || |||| Sbjct 2093 TCTCAGTCTCCAGGTTGTTTTCACCCATGAACAACTCAAGTTTCCTCACGATTTCCAGGT 2034 Query 160633 TCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCA 160692 | || |||| ||| || || |||| || | || |||| ||||||||| || || |||| Sbjct 2033 TGGTTTTGATCGGGAAATCCATACCACAAAGATTGATCAAGTACTTCCAGTTTGCACTCA 1974 Query 160693 GGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACA 160752 | || |||||| ||||||| || | || ||||| || || ||||| ||||| || | Sbjct 1973 TCTTGTAGAGGTCCTTCATGCAGTTGAGGTCAGCCTGAACCCGACTCCATGAAGCATAAA 1914 Query 160753 CTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCA 160812 | || |||| | | |||||||||||||| |||| |||||| || | || ||| || Sbjct 1913 CCACACTCTCCAACTGGCTGGCCACAAAGACATTATTGAAACAGGATGCAATGCCCGTCA 1854 Query 160813 CCGCCAG--AAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTG 160870 |||| || ||| || | || || | |||| |||||| || | ||| || | ||||| Sbjct 1853 CCGC-AGCTAAAAAAGA-CTCTTCTGATTTTCTGTCCACATGAATGCAGTAGAAATTCTG 1796 Query 160871 AGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGAT 160930 |||| ||||||||||| || | ||| || | ||| || || || ||||| | ||| || Sbjct 1795 AGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTAT 1736 Query 160931 AGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCG 160990 ||| || || || || || || | ||| || ||| |||| | | | || || || Sbjct 1735 AGAATATGCGATTGGGAAATCCGCCTCTTCTTCACTAAGGGGCTCTACAATATATTTGCG 1676 Query 160991 CGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 | ||||||| ||| | || || | |||||||| || || Sbjct 1675 CATCTTGATGAAAGAGGTCCAGTCACTGGTCATGTTTATGTA 1634 >seq131350 Length=683 Score = 185 bits (204), Expect = 1e-41 Identities = 292/415 (70%), Gaps = 4/415 (1%) Strand=Plus/Plus Query 160620 ACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTC 160679 ||||| || ||||| || |||| ||| || || |||| || | || |||| ||||||| Sbjct 83 ACGATTTCCAGGTTGGTTTTGATCGGGAAATCCATACCACAAAGATTGATCAAGTACTTC 142 Query 160680 CATTTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTC 160739 || || || |||| | || |||||| ||||||| || | || ||||| || || ||| Sbjct 143 CAGTTTGCACTCATCTTGTAGAGGTCCTTCATGCAGTTGAGGTCAGCCTGAACCCGACTC 202 Query 160740 CAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGAC 160799 || ||||| || || || |||| | | |||||||||||||| |||| |||||| || Sbjct 203 CATGAAGCATAAACCACACTCTCCAACTGGCTGGCCACAAAGACATTATTGAAACAGGAT 262 Query 160800 ACGATTCCCACCACCGCCAG--AAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGC 160857 | || ||| ||||| ||| ||| || | || || | |||| |||||| || | || Sbjct 263 GCAATGCCCGTCACCG-CAGCTAAAAAAGA-CTCTTCTGATTTTCTGTCCACATGAATGC 320 Query 160858 AATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTAT 160917 | || | ||||||||| ||||||||||| || | ||| || | ||| || || || | Sbjct 321 AGTAGAAATTCTGAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGT 380 Query 160918 GATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGG 160977 |||| | ||| ||||| || || || || || || | ||| || ||| |||| | | Sbjct 381 GATGAACCACTATAGAATATGCGATTGGGAAATCCGCCTCTTCTTCACTAAGGGGCTCTA 440 Query 160978 TCAGGTACTTTCGCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 | || || ||| ||||||| ||| | || || | |||||||| || || Sbjct 441 CAATATATTTGCGCATCTTGATGAAAGAGGTCCAGTCACTGGTCATGTTTATGTA 495 >seq22731 Length=1787800 Score = 181 bits (200), Expect = 1e-40 Identities = 232/320 (73%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | | |||| || ||||| || || || || | |||||||| ||| Sbjct 1688162 TAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAGATATTGAAGAGACAC 1688221 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| | ||||| || || ||||| || || ||||| || || | |||||||| ||||| Sbjct 1688222 ATGTAACAGCCCTCATCATCCACTGTTGTGTTCCAGAAGGTGATGGTTGAGTTCCGGAGT 1688281 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| || || ||||| || | || ||||| | ||| || || ||||| || |||||| Sbjct 1688282 CCCAGCTCGGTGATGTTTACCCTGTCCTTATAGGCAGGCTGGACCACAACCCCATGGTTC 1688341 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 | |||| | ||| ||||||| || || || ||||| | |||||||| ||||| ||| Sbjct 1688342 TTGCTGTAAGTGACCATGTTTTCTGGACTTACAGCCTTCTTTTTCTGCCATGTTACAATC 1688401 Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 | | | || | || ||||| |||||||||| || || || ||||||||||| | | Sbjct 1688402 AAAGCTTCCTGGGAAGTTTGCAGAGAACATCTCAAGGATGCAGGTGTGTTCAGCAGCTTT 1688461 Query 168450 CGCTCATCTTGAGTTACGAC 168469 | ||||| || || || || Sbjct 1688462 CTTTCATCATGGGTCACCAC 1688481 >seq121270 Length=520 Score = 161 bits (178), Expect = 1e-34 Identities = 248/353 (70%), Gaps = 3/353 (1%) Strand=Plus/Minus Query 160037 CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTC 160096 ||| | | |||| | |||||| || |||| ||| |||| ||| || |||||| ||| Sbjct 498 CAGGGCTTTGTGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGGGGTCAACATCTGT 439 Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || ||||| || || | ||||| || | || ||||| | || ||| || Sbjct 438 GTCAAACTTATTGGCAAAAAAGTGGTGC---TTACGCAGCATCCATTTCAAGTCGCCAAC 382 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 |||||| ||||| || || || | |||||| || |||| |||||||| | || || || Sbjct 381 CCCGAAAACGCACACAGAGCGCACGTGCACCCCACTGCAGGGCGGGTAGGGCGCGCCCTT 322 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 | || ||||||||| ||||||||||||| |||||||| || | || | |||||| || Sbjct 321 GGAAACATCACCTTCGAAGTACTGCCACTTGACAAACCTAGCGACAGCATTCATGTCAGA 262 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 ||| || || | | || | | || || || |||| || | || | ||| Sbjct 261 CAAGTCATACTTATGGTTTGAGGAGAGTGAGCCAGGGACTTCGGGGATCCTTTGGATGGT 202 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 |||||| |||| || ||||||||||| ||||| | | ||| |||||||||| Sbjct 201 GGCCCAGAGGTACTCATCGGGGCTGTATGTGTCTTGGGCCCACTCCATGAACT 149 >seq16566 Length=6089551 Score = 125 bits (138), Expect = 8e-24 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 || |||||| |||| |||| ||| |||| |||||| | ||||| || |||| | | | Sbjct 1092571 AGGTATTTTGCTAGCTCACTTGGAGAGTTATAATCTTCCACATGAATGAATGAATCAGCT 1092512 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || ||||| |||| || || ||||| ||||| | ||||| | || ||| Sbjct 1092511 GGAATATAATTCTCATAGTTTTCCCTAGACGGTCCCAAAACAACAGGTACCGAACCTGCC 1092452 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 || || | ||||| |||||||| |||||| || ||||||||||||||||||| | Sbjct 1092451 AAAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGAATTGAGTTTTCAAATGAA 1092392 Query 176412 AAATAGAACTTACA 176425 | ||| || || || Sbjct 1092391 AGATAAAATTTGCA 1092378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576101010965760