Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq26070 91.5 2e-13 seq14035 82.4 9e-11 >seq26070 Length=15207027 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 65443 AATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAG 65502 |||||||||||||| |||||||| ||| || || |||||||||||||||||||||||| Sbjct 5603880 AATCCATTTGACTTCATGGAAAATATTTCACTGGAAGGGAAGACCAACTTCTTTGAGAAG 5603821 Query 65503 CGAGTTGGGGACTAT 65517 |||| ||||| ||| Sbjct 5603820 AGAGTAGGGGAATAT 5603806 >seq14035 Length=1410301 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 65443 AATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAG 65502 |||||||||||||| |||||||| ||| || || |||||||||||||||||||| ||| Sbjct 226374 AATCCATTTGACTTCATGGAAAATATTTCACTGGAAGGGAAGACCAACTTCTTTGAAAAG 226433 Query 65503 CGAGTTGGGGACTAT 65517 |||| || || ||| Sbjct 226434 AGAGTAGGTGAATAT 226448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595413925370880