Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq33490 104 4e-17 seq10252 91.5 3e-13 seq21974 84.2 4e-11 >seq33490 Length=7594977 Score = 104 bits (114), Expect = 4e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||| || || |||| ||| || || || || || ||||| || | || Sbjct 4307007 ATGTTGTAGTCAGACAAAGTTCATCCATCCTCCAACTGCTTACCAGCAAAGATCAGCCTG 4307066 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||||||||| |||||||| ||||| || || |||| ||||| |||| | ||||| Sbjct 4307067 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTATATAGTG 4307126 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 | || | ||||| | || | || || || ||||| || || |||||||| || ||| Sbjct 4307127 TATGAGGGTTCAACCTTGAGCATGATGGTCTTCCCTGTAAGGGTCTTTACAAAAATCTGC 4307186 Query 193359 AT 193360 || Sbjct 4307187 AT 4307188 >seq10252 Length=5655956 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || ||| | ||||| | |||| ||| || || ||| ||||| || Sbjct 4525573 ACCACCACGAAGTCTCAGTGCAAGATGAAGGGTAGACTCCTTTTGAACATTGTAGTCAGA 4525632 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || |||| ||| || | || || || ||||| || | | || ||||||||||| Sbjct 4525633 CAAAGTTCGTCCATCCTCCAGCTGCTTACCAGCAAAGATCAGCTTTTGCTGATCAGGAGG 4525692 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||| ||||| || || |||| ||||| |||| ||| | || ||| ||||| Sbjct 4525693 AATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAATGTCCAAAGGTTCAAC 4525752 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || | || || |||| || || ||||| Sbjct 4525753 CTCGAGTGTGATGGTCTTTCCCATAAGGGTCTTTATGAAAATCTGCAT 4525800 >seq21974 Length=3367775 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || ||||| || | || || ||||||||||| |||||||| ||||| || || Sbjct 384473 TGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 384414 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || ||||| |||| ||||| || |||| ||||| || || | || || || ||| Sbjct 384413 TTTACTTTTACATTTCCTATAGTGTCCGAAGGATCAACCTCAAGCATGATGGTCTTCCCT 384354 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 | || || |||||||| || || || Sbjct 384353 GCAAGGGTCTTTACAAAAATATGAAT 384328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897911589496320