Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq33490 114 3e-20 seq10252 104 5e-17 seq22538 98.7 2e-15 seq14035 87.8 4e-12 >seq33490 Length=7594977 Score = 114 bits (126), Expect = 3e-20 Identities = 163/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| | ||| || | ||| | || | ||| || ||| || || ||||| Sbjct 4306962 ACCACCACGAAGTCTTAACACAAGATGAAGGGTGGACTCCTTTT-GATGTTGTAGTCAGA 4307020 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||| | |||| ||||| || |||||||||||||| | || || |||||||| || Sbjct 4307021 CAAAGTTCATCCATCCTCCAACTGCTTACCAGCAAAGATCAGCCTGTGCTGATCAGGAGG 4307080 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||||| || || || ||||||||| ||||| | ||| | ||| || Sbjct 4307081 AATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTATATAGTGTATGAGGGTTCAAC 4307140 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || | ||||| || || || | || || | ||| |||||||| Sbjct 4307141 CTTGAGCATGATGGTCTTCCCTGTAAGGGTCTTTACAAAAATCTGCAT 4307188 >seq10252 Length=5655956 Score = 104 bits (114), Expect = 5e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | | | | | ||| | |||| ||| ||| || | ||| || |||| Sbjct 4525573 ACCACCACGAAGTCTCAGTGCAAGATGAAGGGTAGACTCCTTTTGA-ACATTGTAGTCAG 4525631 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || |||||| |||| |||| || |||||||||||||| | | || |||||||| | Sbjct 4525632 ACAAAGTTCGTCCATCCTCCAGCTGCTTACCAGCAAAGATCAGCTTTTGCTGATCAGGAG 4525691 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || ||||||||| |||| || | | ||| | Sbjct 4525692 GAATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAATGTCCAAAGGTTCAA 4525751 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || || ||||| || || | | || || || || |||||||| Sbjct 4525752 CCTCGAGTGTGATGGTCTTTCCCATAAGGGTCTTTATGAAAATCTGCAT 4525800 >seq22538 Length=2998977 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 || || ||||| || |||||| ||| ||||| || |||||||||||||| | ||| || Sbjct 2995469 TTGTAGTCAGACAAAGTTCGTCCATACTCCAACTGCTTACCAGCAAAGATCAGTCTTTGC 2995410 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 |||||||| || |||||||| |||| || || || ||||||||| | ||| || Sbjct 2995409 TGATCAGGAGGAATTCCTTCCTTATGCTGGATCTTGGCTTTTACATTTTCTGTAGTGTCC 2995350 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | | ||| || || || || ||||| || | | | || || || || |||||||| Sbjct 2995349 AAGGGTTCAACCTCAAGTGTGATGGTCTTCCTCATAAGGGTCTTTATGAAAATCTGCAT 2995291 >seq14035 Length=1410301 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 49823 ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 49882 ||| ||||| ||| || |||||||| || || |||| |||||| ||| || | Sbjct 226159 ACAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAG 226100 Query 49883 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 49942 || ||||| | ||||| || || ||||| ||||||||||||||| || ||||||||| Sbjct 226099 GCCGGGCATCAGTCCTCATTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAA 226040 Query 49943 TATACCCTCGACACACGCAAATGCT 49967 || || || ||| | ||||| ||| Sbjct 226039 GATTCCTTCCACA-ATGCAAAAGCT 226016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982525186977600