Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq33490 104 4e-17 seq10252 100 5e-16 seq22538 95.1 2e-14 >seq33490 Length=7594977 Score = 104 bits (114), Expect = 4e-17 Identities = 167/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTC-TTTAGAAATAT 171891 |||| || |||||| | ||||| ||| || | ||| | || | ||| ||| || | | Sbjct 4306953 TTTCTTAGCACCACCACGAAGTCTTAACACAAGATGAAGGGTGGACTCCTTTTGA--TGT 4307010 Query 171892 TATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTT 171951 | || || || |||| || | | || ||||| || ||||||||||| || | || || | Sbjct 4307011 TGTAGTCAGACAAAGTTCATCCATCCTCCAACTGCTTACCAGCAAAGATCAGCCTGTGCT 4307070 Query 171952 GGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTG 172011 | ||||| || |||||||| ||||| || || || ||||||||| |||||| | || Sbjct 4307071 GATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTATATAGTGTATG 4307130 Query 172012 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | | ||| || | || | ||||| || || || | || || | || |||||||| Sbjct 4307131 AGGGTTCAACCTTGAGCATGATGGTCTTCCCTGTAAGGGTCTTTACAAAAATCTGCAT 4307188 >seq10252 Length=5655956 Score = 100 bits (110), Expect = 5e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||||| | | | | ||| | |||| ||| || || ||| || || || Sbjct 4525573 ACCACCACGAAGTCTCAGTGCAAGATGAAGGGTAGACTCCTTTTGAACATTGTAGTCAGA 4525632 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| |||| | || |||| || ||||||||||| || | | || || ||||| || Sbjct 4525633 CAAAGTTCGTCCATCCTCCAGCTGCTTACCAGCAAAGATCAGCTTTTGCTGATCAGGAGG 4525692 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| ||||| || || || ||||||||| |||| | || | | ||| || Sbjct 4525693 AATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAATGTCCAAAGGTTCAAC 4525752 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| || || | | || || ||||| |||||||| Sbjct 4525753 CTCGAGTGTGATGGTCTTTCCCATAAGGGTCTTTATGAAAATCTGCAT 4525800 >seq22538 Length=2998977 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | || | || | ||| || || || Sbjct 2995527 TTTCTTAGCACCACCACGAAGTCTCAACACAAGGTGAAGGGTGGACTCATTTTGAACGTT 2995468 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| |||| | | ||||| || ||||||||||| || | ||| || || Sbjct 2995467 GTAGTCAGACAAAGTTCGTCCATACTCCAACTGCTTACCAGCAAAGATCAGTCTTTGCTG 2995408 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| |||| || || || ||||||||| | |||| || | Sbjct 2995407 ATCAGGAGGAATTCCTTCCTTATGCTGGATCTTGGCTTTTACATTTTCTGTAGTGTCCAA 2995348 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||| || || || || ||||| || | | | || || ||||| |||||||| Sbjct 2995347 GGGTTCAACCTCAAGTGTGATGGTCTTCCTCATAAGGGTCTTTATGAAAATCTGCAT 2995291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903382570540800