Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq10252 113 4e-20 seq28653 104 2e-17 seq23020 93.3 4e-14 seq16386 87.8 2e-12 seq33511 84.2 2e-11 seq19862 84.2 2e-11 >seq10252 Length=5655956 Score = 113 bits (124), Expect = 4e-20 Identities = 151/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || || || || || | || || || || || ||||| || ||| | Sbjct 4525801 GATGCAGATTTTCATAAAGACCCTTATGGGAAAGACCATCACACTCGAGGTTGAACCTTT 4525742 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||| |||||| |||||| |||||||| || || |||||||| ||||| ||||| Sbjct 4525741 GGACATTATAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 4525682 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| |||||||||| || || |||||||||||| ||| |||| || || || Sbjct 4525681 GCAAAAGCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGACGAACTTTGTCTGACTACAA 4525622 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 |||||||||| || || || || |||| Sbjct 4525621 TGTTCAAAAGGAGTCTACCCTTCATCTTG 4525593 >seq28653 Length=4296906 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || || || || || |||||||| | ||| || Sbjct 624206 GATGCAGATTTTCGTAAAGACCCTTACAGGGAAGACCATCACGCTCGAGATTGAAACCTT 624265 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||| ||||| |||||| |||||||| || || |||||||| ||||| ||||| Sbjct 624266 GCACACTACAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 624325 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 ||| |||||||||| |||||||||||||| ||| Sbjct 624326 GCAAAAGCTGATCTTTGCTGGGAAACAGCTGGAAGAT 624362 >seq23020 Length=748909 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || || ||| | Sbjct 60746 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 60805 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 60806 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGACCAG 60865 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| |||||||| || ||| | | |||| || || ||| Sbjct 60866 CAGAGGCTGATCTTTGCCGGCAAACAGCTAGAAGATGGCCGCACTCTGTCTGACTACAAC 60925 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || ||||| || || || ||| Sbjct 60926 ATCCAGAAGGAGTCCACTCTGCAC 60949 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || || ||| | Sbjct 60974 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 61033 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 61034 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGACCAG 61093 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| ||||| || |||||||| ||| | | | || ||||| ||| Sbjct 61094 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTATCTGATTACAAC 61153 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || ||||| || || || ||| Sbjct 61154 ATCCAGAAGGAGTCCACCCTGCAC 61177 >seq16386 Length=4700455 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 632255 GATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 632314 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||||||| |||||||| || || | ||||| || Sbjct 632315 TGACACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAAGAGGGCATCCACCCCGACCA 632374 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || |||||||||| || || || ||||| || | | | |||| || || || Sbjct 632375 GCAGATGCTGATCTTTGCAGGCAAGCATCTGGAAGACGGCCGCACCCTGTCCGACTACAA 632434 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| || ||||| || || || ||| ||||| Sbjct 632435 CATCCAGAAGGAGTCCACCCTGCACCTGGTG 632465 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || || || || || || || || || || || || Sbjct 631113 ACAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 631172 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||||||| |||||||| || || | ||||| Sbjct 631173 AGTGACACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAAGAGGGCATCCACCCCGAC 631232 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | |||||||||| || || || ||||| || | | | |||| || || Sbjct 631233 CAGCAGAGGCTGATCTTTGCAGGCAAGCATCTGGAAGACGGCCGCACCCTGTCCGACTAC 631292 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTG 24913 | ||| || ||||| || || || | | ||||| Sbjct 631293 ATCATCCAGAAGGAGTCCACCCTGCCCCTGGTG 631325 >seq33511 Length=8354299 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 || |||||||||| | || || || || || || || || || || || || || ||| Sbjct 8199435 GACGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAGCCCAG 8199494 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || |||||| | ||||| ||||| || | ||| || || Sbjct 8199495 TGAAACCATCGAGAATGTCAAGGCCAAGATCTAGGACAAGGAAGGCATCCTTCCTGACCA 8199554 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||| | |||| || |||||||||||| | | | | || || || || Sbjct 8199555 GCAGCGGCTGATCCTCACCGGAAAGCAGCTGGAGGATGACTGGACCCTTTCCGACTACAA 8199614 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 ||| || || || || || || || ||||| ||| ||| || ||| |||||||| Sbjct 8199615 CATCCAGAAAGAGTCCACCCTGTACCTGGTGCTGCTCCTGCTTGGTGGCATCACTGAGCC 8199674 Query 24943 A 24943 | Sbjct 8199675 A 8199675 >seq19862 Length=8011266 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 9/209 (4%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || || || || | |||||| | || ||| || | Sbjct 7074723 GATGCAGATTTTCGTAAAGACCCTTACAGGGAAGACCACCACGCTCAAGGTTGAACCCTC 7074664 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| || |||| |||||| | || || |||| ||| |||| ||||| Sbjct 7074663 GGACACTATA--------AAAAGCCAAGATCTAGGATAAGGAAGAAATTTCTCCTGATCA 7074612 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||||||| || | ||| | |||||| ||| |||| || || || Sbjct 7074611 GCAAAGGCTGATCTTTGCTGGTGAGCAGTTAGAGGATGAATGAACTTTGTCTGACTAAAA 7074552 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 |||||||||||| || || || || |||| Sbjct 7074551 CATTCAAAAGGAGTCCACCCTTCATCTTG 7074523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449026058369280