Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq19727 91.5 1e-13 >seq19727 Length=12937306 Score = 91.5 bits (100), Expect = 1e-13 Identities = 214/322 (66%), Gaps = 1/322 (0%) Strand=Plus/Plus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 || || || || || || ||| | || ||||| | ||||| || | ||| ||||| Sbjct 7911196 AGATCTGTTTCAGGATTCTCATACTCAGGACAGAGAACAAATTTTTTAACGAATCCATCC 7911255 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 | || |||||| | |||| | || || || || ||| ||| | | || || || Sbjct 7911256 AACATGTCCTGCAGCTTATTCGCCTCATGAGATCCACTGATAATGTAGCACTCATTCTTA 7911315 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCC 34494 ||| | ||| || | || |||||||| || || || || || || || || | | Sbjct 7911316 ACATCAAACTGGGTCTCTGCTCCCAGCTCACAACCAAAATATTTGGTGGGATACGTTGGA 7911375 Query 34495 GGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554 || | ||||||||| || || || |||||| | || || |||||||| || || Sbjct 7911376 GGCTGATTAAGCGCCTTTGCAATGTCAACCATGTTAAGTATAACTGTCTTGATTCCATTT 7911435 Query 34555 CCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCC 34614 || || | || |||||||| | | | |||||||||||| | |||||| | | | | Sbjct 7911436 CCTTTGCTCTCAACCTTGGCA-ACAAACAGGGCATTTTGTAGTGATAGAACTGGCCTGAC 7911494 Query 34615 ACATTGCGGTTAACGTTCACAG 34636 ||| | | ||| ||||| |||| Sbjct 7911495 ACACTACAGTTGACGTTGACAG 7911516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412061837171168