Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq23020 136 3e-27 seq33511 131 1e-25 seq16386 125 5e-24 seq9583 122 6e-23 seq17823 111 1e-19 seq73829 100 2e-16 seq61872 96.9 2e-15 seq26011 82.4 5e-11 >seq23020 Length=748909 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||| ||||||||| ||||| || || ||||| |||| |||| Sbjct 61185 AGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGATAGAGTGCGGCCATCT 61126 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| |||||||||||||| | |||||||| | || | ||||||||||| Sbjct 61125 TCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCC 61066 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || ||| ||| || || | ||| |||||| Sbjct 61065 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 61006 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || |||||||| || |||||||||||| Sbjct 61005 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 60973 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||| | | ||||| ||||| | ||| ||||||||| ||||| ||||| || Sbjct 60972 CCTCCCCTGAGACGGAGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 60913 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| || || || || ||||| |||||||| | |||||||| | || Sbjct 60912 AGAGTGCGGCCATCTTCTAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 60853 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || ||| | || | || ||| ||| || Sbjct 60852 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACC 60793 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || || |||||||| || ||||||||||| Sbjct 60792 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 60746 >seq33511 Length=8354299 Score = 131 bits (144), Expect = 1e-25 Identities = 158/213 (74%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||||| | |||| ||| ||||| ||||| ||||| || ||| | | ||||| Sbjct 8199648 CAGCACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTCCAGTCATC 8199589 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| |||||||||| || |||||| || |||||||| | | | || |||||||| Sbjct 8199588 CTCCAGCTGCTTTCCGGTGAGGATCAGCCGCTGCTGGTCAGGAAGGATGCCTTCCTTGTC 8199529 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | |||| ||| ||| || |||| || ||| Sbjct 8199528 CTAGATCTTGGCCTTGAC--ATTCTCGATGGTTTCACTGGGCTCCACCTCAAGAGTGATG 8199471 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGC 34975 ||||| || || |||||||| |||||||||||| Sbjct 8199470 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGC 8199438 >seq16386 Length=4700455 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||| ||||||||| ||||| ||||| || ||| |||| | || Sbjct 632467 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCT 632408 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || |||||||| |||||||| | | | ||||| ||||| Sbjct 632407 TCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCC 632348 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| |||||| | || | ||| ||| ||| || || | ||| |||||| Sbjct 632347 TGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 632288 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| || ||||||||||| Sbjct 632287 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 632256 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||||| | | |||| ||||||||| ||| | ||||| || ||| |||| | || ||| Sbjct 631324 ACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCC 631265 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||| || || |||||||| | |||||||| | | | ||||| ||||| | Sbjct 631264 AGATGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGG 631205 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || ||| |||||| | || | ||| ||| ||| || || | ||| |||||||| Sbjct 631204 ATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 631145 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || |||||||| || ||||||||||| Sbjct 631144 CCAGTCAGGGTCTTCACGAAGATCTGCAT 631116 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||||| | | |||| ||||||||| ||| | ||||| || ||| |||| | || ||| Sbjct 631552 ACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCC 631493 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||| || || |||||||| |||||||| | | | ||||| ||||| | Sbjct 631492 AGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGG 631433 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || ||| |||||| | || | ||| ||| ||| || || | ||| |||||||| Sbjct 631432 ATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 631373 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || |||||||| || ||||||||||| Sbjct 631372 CCAGTCAGGGTCTTCACGAAGATCTGCAT 631344 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||||| | | |||| ||||||||| ||| | ||||| || ||| |||| | || ||| Sbjct 631780 ACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCC 631721 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||| || || |||||||| |||||||| | | | ||||| ||||| | Sbjct 631720 AGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGG 631661 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || ||| |||||| | || | ||| ||| ||| || || | ||| |||||||| Sbjct 631660 ATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 631601 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || |||||||| || ||||||||||| Sbjct 631600 CCAGTCAGGGTCTTCACGAAGATCTGCAT 631572 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||||| | | |||| ||||||||| ||| | ||||| || ||| |||| | || ||| Sbjct 632008 ACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCC 631949 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||| || || |||||||| |||||||| | | | ||||| ||||| | Sbjct 631948 AGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGG 631889 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || ||| |||||| | || | ||| ||| ||| || || | ||| |||||||| Sbjct 631888 ATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 631829 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || |||||||| || ||||||||||| Sbjct 631828 CCAGTCAGGGTCTTCACGAAGATCTGCAT 631800 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||||| | | |||| ||||||||| ||| | ||||| || ||| |||| | || ||| Sbjct 632236 ACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCC 632177 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||| || || |||||||| |||||||| | | | ||||| ||||| | Sbjct 632176 AGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGG 632117 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || ||| |||||| | || | ||| ||| ||| || || | ||| |||||||| Sbjct 632116 ATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 632057 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || |||||||| || ||||||||||| Sbjct 632056 CCAGTCAGGGTCTTCACGAAGATCTGCAT 632028 >seq9583 Length=785227 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||| | | ||||| ||||| | |||| ||||||||| ||||| ||||| || Sbjct 67177 CCTCCCCTGAGACGGAGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 67118 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | | |||| ||||| ||||| ||||| |||||||| | |||||||| | || Sbjct 67117 AGAACGTGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 67058 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||| ||| | || || || ||| | || | || ||| ||| || Sbjct 67057 ATGCCCTCCTCGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACT 66998 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || || |||||||| || ||||||||||| Sbjct 66997 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 66951 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||| ||||||||| ||||| ||||| || || || | |||| Sbjct 67390 AGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGTGGCCATCT 67331 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||||| |||| || ||||||||||| | |||||||| | || | || |||||||| Sbjct 67330 TCCAGTGGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCC 67271 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || | || | | ||| ||| || || | ||| |||||| Sbjct 67270 TGGATCTTGGCCTTCGCGTTCTCAATGGTGTTGCTGGGCTCCACTTCCAGGGTGATGGTC 67211 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | ||| |||| || |||||||||||| Sbjct 67210 TTGCCGGACAGGATCTTCACGAAGATCTGCATG 67178 >seq17823 Length=3576200 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||| ||||||||| ||||| ||||| || || | | |||| Sbjct 944380 AGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGGGTGGCCATCT 944321 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || | ||||||||| | |||||||| | || | || |||||||| Sbjct 944320 TCCAGCTGCTTGCCCGTGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCATCCTTGTCC 944261 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || ||| ||| || || | ||| |||||| Sbjct 944260 TGGATATTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 944201 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTG 34974 || || || |||||||| ||||||||||| Sbjct 944200 TTGCCAGTCAGGGTCTTCACAAAGATCTG 944172 >seq73829 Length=246 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||| ||||||||| ||||| ||||| || || || | |||| Sbjct 244 AGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGTGGCCATCT 185 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| |||| || ||||||||||| | |||||||| | || | || |||||||| Sbjct 184 TCCAGCGGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCC 125 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || | || | | ||| ||| || || | ||| |||||| Sbjct 124 TGGATCTTGGCCTTCGCGTTCTCAATGGTGTTGCTGGGCTCCACTTCCAGGGTGATGGTC 65 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | ||| |||| || |||||||||||| Sbjct 64 TTGCCGGACAGGATCTTCACGAAGATCTGCATG 32 >seq61872 Length=227 Score = 96.9 bits (106), Expect = 2e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||| ||||||||| ||||| ||||| || ||| |||| | || Sbjct 56 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCT 115 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || |||||||| | |||||||| | || | ||||||||||| Sbjct 116 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 175 Query 34886 TTTATTTTTTGTTTGACG 34903 | || ||| |||||| Sbjct 176 TGGATCTTTGCCTTGACG 193 >seq26011 Length=983821 Score = 82.4 bits (90), Expect = 5e-11 Identities = 152/220 (69%), Gaps = 11/220 (5%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| |||||| ||| ||| ||||| |||||||| || | | |||| Sbjct 497180 CAGCACCAGGTGCATGGTGGACTC--TCTAGATGTTGTAGTCCGACAGAGTCCCGCCATC 497123 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||||||||||||| ||||||||| | ||||||||| | || || |||||||| Sbjct 497122 CTCCAGTTGCTTTCCAATGAAGATCAGGCTCTGCTGGTCTGGAGGGCTGCCTTCCTTGTC 497063 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || || ||||| || || || | ||| ||| ||| | || | || ||| Sbjct 497062 TGGGATCTTGGCCTTGAC--ATTCTTGATGGTGTCACTGGGCTCCATCTCGAGAGTGATG 497005 Query 34943 GT-----CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||| || || |||||||| | || |||||||| Sbjct 497004 GTCTTGCCTTACCAGTCAGGGTCTTCATTAAAATCTGCAT 496965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325077641210144