Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq16386 89.7 4e-13 seq23020 86.0 5e-12 >seq16386 Length=4700455 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | || ||||||| || || ||||| || || || ||||| || || | Sbjct 632482 CCACCCCTGAGGCGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 632423 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || || ||||| ||| | |||| | ||||| || || | Sbjct 632422 AGGGTGCGGCCGTCTTCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGG 632363 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||||||||| || | ||| ||||| | || | |||||| | || || Sbjct 632362 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 632303 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || |||||||| | ||| || || || |||||||| Sbjct 632302 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 632256 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | || | ||||| | || ||||| || || || ||| | || || | Sbjct 631342 CCACCCCTGAGGCGGATCACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGAC 631283 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || || ||||| ||| | |||| || ||||| || || | Sbjct 631282 AGGGTGCGGCCGTCTTCCAGATGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGTGG 631223 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||||||||| || | ||| ||||| | || | |||||| | || || Sbjct 631222 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 631163 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || |||||||| | ||| || || || ||||||||| Sbjct 631162 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 631115 >seq23020 Length=748909 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | ||| || || | || || ||||| || || || ||||| || || | Sbjct 60972 CCTCCCCTGAGACGGAGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 60913 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || |||||||| ||| | |||| || ||||| || || || Sbjct 60912 AGAGTGCGGCCATCTTCTAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 60853 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || || || | || | ||||| | || || Sbjct 60852 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACC 60793 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || ||||| || | ||| || || || ||||||||||| Sbjct 60792 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 60743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384491609531616