Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq31371 165 6e-35 seq18004 114 1e-19 seq8185 109 4e-18 seq21397 98.7 7e-15 seq7841 95.1 9e-14 seq33507 93.3 3e-13 >seq31371 Length=817987 Score = 165 bits (182), Expect = 6e-35 Identities = 707/1104 (64%), Gaps = 15/1104 (1%) Strand=Plus/Minus Query 281750 CCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACA 281809 ||| ||| ||||||||| || | ||||| || || || || || || ||||| || | Sbjct 505190 CCATCAA-AATAGCTGCCTGTACTGCAGCTCCGTAGGCTACTGCCTCGTCAGGGTTGATG 505132 Query 281810 GTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAAT 281868 | | || || | ||||| || | | ||| |||| ||| |||||||| || Sbjct 505131 CTCTTGTTGAGATCACGGCCATTAAAGTAGTCCTGAAGGAGTT-TCTGCACCTTAGGGAT 505073 Query 281869 ACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATC 281928 || | || || || |||| ||||| || || | | | ||||||| || | ||| Sbjct 505072 GCGCGTGGAGCCGCCTACTAGAACAATGTCGTGAATTTTAGCCTTATCCATCTTGGCATC 505013 Query 281929 CAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTC 281988 | | | ||||| || || || || ||||||||| ||||| ||| || || || Sbjct 505012 CCGAAGAGAGTTTTCCACAGGCTCCAGGGTCCCTCTAAACAGGTCTGCACACAGCTCCTC 504953 Query 281989 GAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACT 282046 ||| ||||| || || || | || || ||||| || ||||||| || || | | Sbjct 504952 GAACAGGGCTCTGGT--GATGGATGTGTAGAAGTCAATGCCCTCGAACAGCGACTCGATT 504895 Query 282047 TCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTT 282106 || | | | || || || || |||| | || || || ||||| ||||| | Sbjct 504894 TCCAGGTTGGCCTGCGTGCTGGACGACAGTGTCCTCTTGGCCCGCTCACAGGCTGTGCGC 504835 Query 282107 AGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTTTATAT--TTTCTCTTGAAAT 282164 |||| | | ||| ||| ||| | || | || | | || |||||||| | Sbjct 504834 AGTCGCCTCACTGCTC--GCTTGTTGGGGCTGATGTCCTTCTTGTGCTTCCTCTTGAACT 504777 Query 282165 CTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTC 282224 | || || | | || || || || || || || || || |||| | || | | Sbjct 504776 CCTCCACGAAGTGGCTCACCAGCCGGTTGTCGAAGTCCTCCCCGCCCAGGTGTGTGTCAC 504717 Query 282225 CTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGG 282284 | | || || | || | || | ||||| || | | || | | |||||| | Sbjct 504716 CGGCAGTGGCCTTGACCTCAAAGATCCCATCGTCTATGGTCAGGACGGACACATCAAATG 504657 Query 282285 TTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGAC 282344 | || ||||||| |||||| || || |||| | ||| || |||||| || | Sbjct 504656 TGCCTCCACCCAGATCAAAGATGAGGACATGCCGCTCTCCGTGACCTCCTTTATCTAGCC 504597 Query 282345 CATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAA 282404 | || || | |||||||| || |||||||| || ||||||| ||||| || || |||| Sbjct 504596 CGTAGGCGATGGCAGCAGCTGTGGGTTCATTGATGATTCTCAGCACATTGAGTCCGGCAA 504537 Query 282405 TTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAA 282464 | ||||| || || ||||| || | ||| || || || ||||| || || ||||| | Sbjct 504536 TCACACCTGCGTCCTTGGTGGCCTGGCGTTGAGAGTCATTGAAATAGGCTGGCACAGTGA 504477 Query 282465 TAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTA 282524 | || |||| || || | | || | | |||| ||| || | ||||| || | | Sbjct 504476 TGACAGCATTGGTGACATTGTGGCCCAAAAAAGCCTCTGCAGTCTCCTTCATCTTTGTCA 504417 Query 282525 AAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGA--TTCATTTTGATATGATAC 282582 | ||| || || |||| || || | | | |||| | | |||| || || || Sbjct 504416 GCACCATGGAAGAGATTTCCTCAGG-GTAGAAAGCTTTCTCCTCCCCTTTG-TAGGACAC 504359 Query 282583 TTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGA 282642 | | || || || |||| || |||| |||||||||| ||||||||| || Sbjct 504358 CAGTACCTTGGGCTTGCCTCCTTCATTGATCACTTGAAATGGCCAAAGTTTCATATCGGA 504299 Query 282643 TTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATT 282702 || ||| | || ||||| | || ||||| | ||||| |||||||||| ||| || Sbjct 504298 CTGCACAACAGGATCGTTAAACTTCCTGCCAATCAGACGTTTGGCATCAAAAACAGTGTT 504239 Query 282703 GGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGT 282762 ||||| | || | || | ||||| || ||||||||||| | ||||| || || Sbjct 504238 CTGGGGATTCATGGCTACCTGGTTCTTGGCCGCGTCTCCAATCAGGCGCTCTGTGTCGGT 504179 Query 282763 AAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTT 282822 || | ||||| || || ||||| || || || ||||| ||||| || || || || Sbjct 504178 GAAGGCCACATAGCTGGGGGTCGTGCGGTTGCCCTGGTCATTGGCAATGATCTCCACCTT 504119 Query 282823 ACCATTTTGCCATACACCTACACA 282846 |||| || | ||||| || || Sbjct 504118 GCCATGCTGGAACACACCCACGCA 504095 >seq18004 Length=963510 Score = 114 bits (126), Expect = 1e-19 Identities = 183/259 (71%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 281672 CCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGA 281731 || ||||||||||| | |||||| |||||||||| |||||| | || | | || |||| Sbjct 649071 CCGCCAGCTGTTTCAATACCAAGGGAAAGAGGAGAGACATCCAAGAGCAGCAAATCTTGA 649130 Query 281732 AGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 281791 | |||||| | | ||| ||||| | || | | ||| ||| || | |||||| Sbjct 649131 ACATTTTCAGACTTGTCTCCAGACAGAATGGTGGCCTTCACAGCTGCATCAGAAGCAACA 649190 Query 281792 GCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGT 281851 ||||||||||| |||| ||| ||| |||| ||| |||||||| || | | ||||| Sbjct 649191 GCTTCATCAGGGTTAATGCTTTTATTCAGTTGTTTTCCATTGAAGAAGTCTTGCAGAAGC 649250 Query 281852 TGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATT-TCATGCACCTGTG 281909 | ||| | ||| || ||| | | || | || || | |||||| ||||| | ||||| Sbjct 649251 T-TCTGAATCTTGGGGATATGGGTGGAATCACCCACCAGGACAATTATCATGGATCTGTG 649309 Query 281910 ATTTATCCAGTTTTGAATC 281928 | || || ||||| | ||| Sbjct 649310 ACTTGTCTAGTTTGGCATC 649328 >seq8185 Length=1120919 Score = 109 bits (120), Expect = 4e-18 Identities = 496/775 (64%), Gaps = 30/775 (4%) Strand=Plus/Plus Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | |||||| ||||| | | |||| ||||||||||||||||| | || | Sbjct 736159 GTCATGACTCCACCAATAGTTTCAATATCAAGGGAAAGAGGAGTGACATCCAAGAGCAGC 736218 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || ||||| |||||| | | || ||||| ||||| || || |||||| Sbjct 736219 AAATCTTGAACATTTTCAGACTTGTCTTCAGATAGAATGGCTGCCTGGGAAGTTGCACCA 736278 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 || |||||| ||||| || |||| | | |||||| | ||| || ||||| || | | Sbjct 736279 TAAGCAACACCTTCACTGGGGTTAATGCTCTTATTTAGCTCTTTTCCTTTGAAGAAGTCT 736338 Query 281843 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCT-CCAACTAATACAATTTCATG 281901 | ||||| | ||| | | ||| | || ||| || || || | |||| | || Sbjct 736339 TACAGAAGCT-TCTGAATCTTGGAGTTACAGGTGAAACTACCTACCAGGACAAGATTGTG 736397 Query 281902 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGC 281961 | |||||| || || ||||| | ||| | ||| || || || || ||| | | Sbjct 736398 GATCTGTGACTTGTCTAGTTTGGCATCTTGAAGGGGTTTGTCTACAGGGTCCAGAGTACC 736457 Query 281962 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATC 282021 | |||||||| | | | ||||| ||| | | || |||| || || | || Sbjct 736458 ACAGAACAAGTCAGCATTCAACTCTTCAAATCAAACACTGGTAACAGAGATGTG----TC 736513 Query 282022 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTC---GAAGAAGATAGTGC 282078 ||||| || | |||||||||| ||||| ||| || || || || || || | Sbjct 736514 CATTCCCTCATAGAAAGAATCAATCTCAATACTAGCCTGGGTGCTGGAGGAGGAGAGGGT 736573 Query 282079 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG-GCTTTTG--CTGATTGAT 282134 | ||| | |||||||| || | || | | | || ||| ||| || | |||| Sbjct 736574 GTGCTTATCCCGTTCACAAATAGTGCAGAGACAGCAAACAGAGCTCTTGTTCTCACTGAT 736633 Query 282135 TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTAT 282194 | | || || | | | | | |||||| || ||||| | || || | Sbjct 736634 GCT--TGTGCTTAA-ACTCTGTAATGAAATG----ACTAACCAT----CCAG----TTGT 736678 Query 282195 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 282254 ||| ||||| || ||||| | | | ||| | |||| | | || | || | ||||| Sbjct 736679 TAAAGTCTTCTCCACCCAAGTAGGCGTCTCCAGTTGTAGATTTGACCTCAAAGATTCCAT 736738 Query 282255 CTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 282314 | | || || | | | |||||| || |||||||||| || |||||| || |||| Sbjct 736739 CCTTAATAGTGAGGATTGACACATCAAAAGTGCCACCACCCAAATAAAAAATTAGCACAT 736798 Query 282315 TCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 282374 | | ||| || || || || | | || |||| |||||||||||||| ||||| Sbjct 736799 T--TCTCTGCTTCAACCTTCTTGTCTAAGCTGTAAGCAATAGCAGCAGCAGTTGATTCAT 736856 Query 282375 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 282429 | |||||||| | ||| | || |||||| | || | |||||||| || || || Sbjct 736857 TGATAATTCTAAGTACAATGAGGCCAGCAGTGGTTTCAGCATCTTTGGTTGCCTG 736911 >seq21397 Length=4386595 Score = 98.7 bits (108), Expect = 7e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131181 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 131240 |||| || ||||| ||||| ||||| ||||||||| | || || | |||||||||| Sbjct 3756415 TAGCTACTATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAGAGTTATTCATT 3756356 Query 131241 ACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 131300 | || ||||| ||| | || ||| ||||| || |||||||||||||| || ||||||| Sbjct 3756355 ATGGTGCTCCTAAGGAAATGGAATCATATTACCAGGAAATTGGTAGAGCTGGCCGTGATG 3756296 Query 131301 GA 131302 || Sbjct 3756295 GA 3756294 >seq7841 Length=541876 Score = 95.1 bits (104), Expect = 9e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 400295 AATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTA 400354 ||||||| || || |||| |||||||| || || ||||| | || | || |||||| Sbjct 375168 AATGTACACTTATCCTGACTGAGGGAGACTCGGCCAAAACTCTGGCAGTTTCAGGCCTTG 375109 Query 400355 ATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTA 400414 |||| |||||||||| | || || ||||||||||||||||||||| | | ||||| Sbjct 375108 GTGTTGTTGGAAGAGACAAATACGGTGTTTTCCCACTTAGAGGAAAAATACTCAATGTCC 375049 Query 400415 GGGATGCTAGTCCTAAA 400431 | || ||| || |||| Sbjct 375048 GAGAAGCTTCTCATAAA 375032 >seq33507 Length=5509411 Score = 93.3 bits (102), Expect = 3e-13 Identities = 357/550 (65%), Gaps = 22/550 (4%) Strand=Plus/Plus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| |||||||||||||| || |||| | | ||| |||| ||| || ||||| Sbjct 4633698 GCACCATAAGCAACAGCTTCATCGGGGTTAATGCTCTTATTCAGTTCTTTTCCGTTGAAG 4633757 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 || | | ||||| | ||| | ||| || || || | || || || || | ||||| Sbjct 4633758 AAGTCTTGCAGAAGCT-TCTGAATCTTGGGGATCCGGGTGGAACCACCCACCAGAACAAT 4633816 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | |||||| || || ||||| | ||| | ||||||| || || || || Sbjct 4633817 ATCATGGATCTGTGACTTGTCTAGTTTGGCATCTCGAAGGGCTTTTTCTACAGGGTCCAG 4633876 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GTGAC 282012 | | |||||||| | | | ||||| ||| ||| | ||||| || ||| Sbjct 4633877 GGTGCCACGGAACAAGTCAGCATTCAACTCTTCAAATCGAGCCCGAGTAATGGAGGTG-- 4633934 Query 282013 ATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGT--CGAAGA 282069 || || || ||||| || | | |||||||| ||||| | | || || | || Sbjct 4633935 --TAGAAGTCGATTCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGGGTGCTGGAGG 4633992 Query 282070 AGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTG 282125 ||| |||| || ||||| || ||||| ||||| | || | || | || ||| | Sbjct 4633993 AGAGAGTG--CGCTTAGCCCGCTCACAGGCTGTGCGGAGCCGGCGGACAGCTCTCTTGTT 4634050 Query 282126 CTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAA 282185 || | |||| || | || | || | ||| || || ||| | | || | Sbjct 4634051 CTCACTGAT----GTCCTTCTTGTGCTTGCGCTTAAACTCAGCAATGAAGTGGTTGACCA 4634106 Query 282186 GACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGA 282245 || || ||||| ||||| || ||||| | || | ||| | |||| | | || | | Sbjct 4634107 TCCGGTTGTCAAAGTCTTCTCCACCCAAGTGGGTGTCTCCAGCTGTAGATTTGACCTCAA 4634166 Query 282246 AAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAA 282305 | | ||||||||||| || | | | |||||| || ||||| |||| |||||| | Sbjct 4634167 AGATTCCATCTTCAATAGTGAGGATTGACACATCAAAAGTGCCACCTCCCAAATCAAATA 4634226 Query 282306 TAAGTACATT 282315 | || ||||| Sbjct 4634227 TCAGCACATT 4634236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3733021733328576