Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq10252 132 9e-26 seq33490 123 5e-23 seq23020 123 5e-23 seq28653 120 6e-22 seq27460 113 9e-20 seq22538 111 3e-19 seq21974 111 3e-19 seq23734 109 1e-18 seq15461 105 1e-17 seq26188 87.8 4e-12 seq3476 87.8 4e-12 seq2499 84.2 4e-11 >seq10252 Length=5655956 Score = 132 bits (146), Expect = 9e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || ||||| || || || | ||| || ||||| | | ||| || || || || || Sbjct 4525598 TGAAGGGTAGACTCCTTTTGAACATTGTAGTCAGACAAAGTTCGTCCATCCTCCAGCTGC 4525657 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || |||| ||||| ||||| |||||||||||||| || ||||| Sbjct 4525658 TTACCAGCAAAGATCAGCTTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 4525717 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 |||||||||||||| || | || |||||| || || | || || ||||| || | Sbjct 4525718 GCTTTTACATTTTCTATAATGTCCAAAGGTTCAACCTCGAGTGTGATGGTCTTTCCCATA 4525777 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||||| || |||||||| Sbjct 4525778 AGGGTCTTTATGAAAATCTGCAT 4525800 >seq33490 Length=7594977 Score = 123 bits (136), Expect = 5e-23 Identities = 152/204 (75%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || || || || ||||| | | ||| || || || | || Sbjct 4306987 TGAAGGGTGGACTCCTTTTG-ATGTTGTAGTCAGACAAAGTTCATCCATCCTCCAACTGC 4307045 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || || || ||||| ||||| |||||||||||||| || ||||| Sbjct 4307046 TTACCAGCAAAGATCAGCCTGTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 4307105 Query 82728 GCTTTTACATTTTCAATCGTATCATTA-GGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 ||||||||||||| || || | || | ||||| || | | | || ||||| ||||| Sbjct 4307106 GCTTTTACATTTTATATAGTGT-ATGAGGGTTCAACCTTGAGCATGATGGTCTTCCCTGT 4307164 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 | ||||||||||| |||||||| Sbjct 4307165 AAGGGTCTTTACAAAAATCTGCAT 4307188 >seq23020 Length=748909 Score = 123 bits (136), Expect = 5e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | |||||| || || || ||||| || || |||||||||||| | | || Sbjct 61189 ACGAAGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGATAGAGTGCGGCC 61130 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || || || || || ||||| || || || || || || || || || ||||| Sbjct 61129 ATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTT 61070 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| || || || || || || || || | || || || |||| || || Sbjct 61069 GTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGAT 61010 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| || || |||||||| Sbjct 61009 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 60974 >seq28653 Length=4296906 Score = 120 bits (132), Expect = 6e-22 Identities = 123/157 (78%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || ||||| ||||||||||| || |||| ||||| ||||| |||||||||||| Sbjct 624361 TCTTCCAGCTGTTTCCCAGCAAAGATCAGCTTTTGCTGATCAGGAGGAATTCCTTCCTTA 624302 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTAT-CATTAGG-TTCTACTTCCAAAGTTA 82773 || || ||||| |||||||||||||| | || | || ||| ||| | || | || | Sbjct 624301 TCCTGGATCTTGGCTTTTACATTTTCTGTAGTGTGCA--AGGTTTCAATCTCGAGCGTGA 624244 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| | |||||||| || |||||||| Sbjct 624243 TGGTCTTCCCTGTAAGGGTCTTTACGAAAATCTGCAT 624207 >seq27460 Length=7433090 Score = 113 bits (124), Expect = 9e-20 Identities = 147/201 (73%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 || || || || ||||| || || || |||| ||| || ||||| || || || Sbjct 5710097 AGGGTGGACTCCTTCTGAATGTTGTAGTCAG------TTCATCCATCTTCCAGCTGCTTG 5710150 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| || ||||| ||||| | ||| || ||||||||| |||| ||||| ||| Sbjct 5710151 CCAGCAAAGATCAGCCTTTGCTGATCAGAAGGAATGCCTTCCTTAGCTTGGATCTTGGCT 5710210 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACT-TCCAAAGTTATCGTCTTGCCTGTCAA 82789 ||||||||||| | || || ||||| | | |||| || || ||||| ||||| | Sbjct 5710211 TTTACATTTTCTGTAGTGTC-CGAGGTTTCAGTCTCCAGTGTGATGGTCTTCCCTGTAAG 5710269 Query 82790 CGTCTTTACAAATATCTGCAT 82810 |||||||| || || || || Sbjct 5710270 GGTCTTTACGAAAATATGTAT 5710290 >seq22538 Length=2998977 Score = 111 bits (122), Expect = 3e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 ||| || || || || || || | || || ||||| | | ||| || | || | || Sbjct 2995494 GTGAAGGGTGGACTCATTTTGAACGTTGTAGTCAGACAAAGTTCGTCCATACTCCAACTG 2995435 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || ||||||||||| |||||||| ||||| ||||| ||||||||||||| || ||||| Sbjct 2995434 CTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATGCTGGATCTT 2995375 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 |||||||||||||| | || || ||||| || || | || || ||||| | | Sbjct 2995374 GGCTTTTACATTTTCTGTAGTGTCCAAGGGTTCAACCTCAAGTGTGATGGTCTTCCTCAT 2995315 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 | ||||||| || |||||||| Sbjct 2995314 AAGGGTCTTTATGAAAATCTGCAT 2995291 Score = 96.9 bits (106), Expect = 7e-15 Identities = 138/193 (72%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 ||||| || || || ||||| | | ||| | ||||| || || || ||||||||||| Sbjct 2174773 TTCTGAATGTTGTAGTCAGACAAAGTTCGTTCATCTTCCAGCTGCTTGCCAGCAAAGATG 2174832 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 || ||||| ||||| ||| | ||||||| |||| | || || || || ||||||||||| Sbjct 2174833 AGCCTTTGCTGATCAGGAAGAATTCCTTTCTTACCCTGGATTTTGGCCTTTACATTTTCT 2174892 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC---AACG--TCTTTA 82797 || || || | ||| | || | || |||||||| | | | || | | |||| Sbjct 2174893 ATAGTGTCCAAGGTTTCAAATTTGAGTGTAATCGTCTTTCTTACCTGGAAGGATTTTTTA 2174952 Query 82798 CAAATATCTGCAT 82810 |||| |||||||| Sbjct 2174953 CAAAAATCTGCAT 2174965 >seq21974 Length=3367775 Score = 111 bits (122), Expect = 3e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 || || || ||||||||||| || ||||| ||||| ||||| |||||||||||||| || Sbjct 384476 AGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 384417 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 |||||| ||||||||||| | || || || ||| || || || | | || ||||| Sbjct 384416 ATCTTTACTTTTACATTTCCTATAGTGTCCGAAGGATCAACCTCAAGCATGATGGTCTTC 384357 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||||||||||| || || || Sbjct 384356 CCTGCAAGGGTCTTTACAAAAATATGAAT 384328 >seq23734 Length=4385887 Score = 109 bits (120), Expect = 1e-18 Identities = 159/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| || |||| | |||||| |||||||||||||| || || ||||| | Sbjct 4304222 CCACCCCTCAGACAGAGAATGAGGTGCAGGGTAGATTCTTTCTGGATGTTGCAATCACAG 4304281 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||||| || ||||| || || || ||||| ||||| | || || || || || Sbjct 4304282 AGAATATAGCCATCTTCCAGCTGCTTGCCAGCCAAGATGAACCTCTGCTGGTC-AACGGG 4304340 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 | || |||||||||| |||| || || ||||| ||||| | |||| | || || ||| Sbjct 4304341 GTGCCCTCCTTATCTTAGGTCTTAGCCTTCACATTCTCAATGGCATCACTGGGCTCAACT 4304400 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCT 82806 |||| || | |||||||||||| ||||| | || |||| Sbjct 4304401 TCCAGGGTGA---TCTTGCCTGTCAGGGTCTTCAAGAAGATCT 4304440 >seq15461 Length=7213747 Score = 105 bits (116), Expect = 1e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || | || || || || ||||| | | ||| || || || | || Sbjct 6276391 TGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGACAAAGTTCATCCATCCTCCAACTGC 6276332 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||||| || ||||| ||||| ||||| ||| |||||||||| || ||||| Sbjct 6276331 TTATCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTTCTTCCTTATCCTGGATCTTG 6276272 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 |||||||||||||| || || || ||||| || | | | || |||| || | Sbjct 6276271 GCTTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTTGAGCCTGATGGTCTGCCCCATA 6276212 Query 82788 AACGTCTTTACAAATATCTGCATTAT 82813 | |||||||| || |||||||| || Sbjct 6276211 AGGGTCTTTACTAAAATCTGCATCAT 6276186 >seq26188 Length=1513842 Score = 87.8 bits (96), Expect = 4e-12 Identities = 113/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||| || | || || ||||||| || || ||||| ||||| ||||| ||| |||||||| Sbjct 1054599 TCTACTGGCTGCTTGCCAGCAAGCATCAGCCTTTGCTGATCAGGAGGAATTTCTTCCTTA 1054658 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| ||||||| |||||| || || || ||||| | || | | || Sbjct 1054659 TCCTGGATCTTGGCTTTTAAATTTTCTATAGTGTCTAAGGGTTCAGCCTCGAGCATGATG 1054718 Query 82776 GTCTTGCCTG--TCAACGTCTTTACAAATATCTG 82807 ||||| ||| | | ||||||||||| ||||| Sbjct 1054719 GTCTT--CTGGATGAGGGTCTTTACAAAAATCTG 1054750 >seq3476 Length=2418285 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/203 (70%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || || || | ||||| | | ||| || || || | || Sbjct 203966 TGAAGGGTGGACTCCTTTTG-ATGTTGCAGTCAGACAAAGTTCACCCATCCTCCAACTGC 203908 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||||| || ||||| ||||| || | |||||||||||| | || ||||| Sbjct 203907 TTACCAGCAAAGAGCAGCCTTTGCTGATCAGGCAGAATTCCTTCCTTACCATGGATCTTG 203848 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 |||||||||||||| || || | ||||| | | | | || ||||| || || Sbjct 203847 GCTTTTACATTTTCTATAGTGTACGAGGGTTCAATCTGGAGCATGATGGTCTTCCCCGTA 203788 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||||| || |||||||| Sbjct 203787 AGGGTCTTTATGAAAATCTGCAT 203765 >seq2499 Length=4701125 Score = 84.2 bits (92), Expect = 4e-11 Identities = 78/98 (80%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| || || || ||||||||||| |||||||| | ||| ||||| |||||||| Sbjct 3615175 CCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTAATC-GGAGGAATTCCTTCT 3615117 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 ||||| || || || || |||| |||||| || || || Sbjct 3615116 TTATCCTGGATTTTGGCCTTTATATTTTCTATAGTGTC 3615079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 979877654456864