Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq23020 147 2e-30 seq16386 136 4e-27 seq73829 134 1e-26 seq9583 131 2e-25 seq33511 123 2e-23 seq17823 122 8e-23 seq61872 109 5e-19 seq26011 91.5 1e-13 >seq23020 Length=748909 Score = 147 bits (162), Expect = 2e-30 Identities = 156/203 (77%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 61171 GGTGGACTCCTTCTGGATGTTGTAATCAGATAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 61113 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| ||||||||| || |||||||| |||||||| |||||| || Sbjct 61112 CGGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCT 61053 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | |||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 61052 TCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 60993 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || ||||| ||||||||| || Sbjct 60992 TCTTCACGAAGATCTGCATGCCT 60970 Score = 134 bits (148), Expect = 1e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || || ||| | | | || || ||||| ||||| Sbjct 60942 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCA-TCTTCTAGCTGTTTGCC 60884 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || |||||||| |||||||| |||||| ||| Sbjct 60883 GGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 60824 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | |||||| |||||||||| || | ||||| ||| ||||||||||| || Sbjct 60823 CACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGT 60764 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 60763 CTTCACGAAGATCTGCAT 60746 >seq16386 Length=4700455 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || |||| ||| || ||| ||| || || |||||||| Sbjct 631313 GGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCC 631254 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||||||||| ||||||| || ||||| ||||||| ||| Sbjct 631253 TGCAAAGATCAGCCTCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTT 631194 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 631193 GACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 631134 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 631133 CTTCACGAAGATCTGCAT 631116 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| || ||| ||| || || |||||||| Sbjct 632453 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCC 632394 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || ||| |||||||||||| ||||||| || ||||| ||||||| ||| Sbjct 632393 TGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTT 632334 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 632333 GACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 632274 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 632273 CTTCACGAAGATCTGCAT 632256 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || |||| ||| || ||| ||| || || |||||||| Sbjct 631541 GGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCC 631482 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || ||| |||||||||||| ||||||| || ||||| ||||||| ||| Sbjct 631481 TGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTT 631422 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| || || |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 631421 GACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 631362 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 631361 CTTCACGAAGATCTGCAT 631344 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || |||| ||| || ||| ||| || || |||||||| Sbjct 631769 GGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCC 631710 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || ||| |||||||||||| ||||||| || ||||| ||||||| ||| Sbjct 631709 TGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTT 631650 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| || || |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 631649 GACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 631590 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 631589 CTTCACGAAGATCTGCAT 631572 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || |||| ||| || ||| ||| || || |||||||| Sbjct 631997 GGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCC 631938 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || ||| |||||||||||| ||||||| || ||||| ||||||| ||| Sbjct 631937 TGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTT 631878 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| || || |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 631877 GACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 631818 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 631817 CTTCACGAAGATCTGCAT 631800 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || |||| ||| || ||| ||| || || |||||||| Sbjct 632225 GGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGGCCGTCTTCCAGATGCTTGCC 632166 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || ||| |||||||||||| ||||||| || ||||| ||||||| ||| Sbjct 632165 TGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCTTTGTCCTGGATCTTTGCCTT 632106 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| || || |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 632105 GACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 632046 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 632045 CTTCACGAAGATCTGCAT 632028 >seq73829 Length=246 Score = 134 bits (148), Expect = 1e-26 Identities = 153/203 (75%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || ||| |||||| Sbjct 230 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGTGGCCA-TCTTCCAGCGGCTTGC 172 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| ||||||||| || ||||||||||||||||| |||||| || Sbjct 171 CAGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCT 112 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | ||||| |||| | |||||||||| || | ||||| ||| ||||||| ||| Sbjct 111 TCGCGTTCTCAATGGTGTTGCTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGACAGGA 52 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || ||||| ||||||||| || Sbjct 51 TCTTCACGAAGATCTGCATGCCT 29 >seq9583 Length=785227 Score = 131 bits (144), Expect = 2e-25 Identities = 150/200 (75%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCAT--CGTGGACGAGTCCTCGAGCTGCTTG 133520 ||||||||| ||||| || ||||| || || ||||| | || || ||||||||| Sbjct 67148 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAACGTGGCCA--TCTTCCAGCTGCTTG 67091 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || || | || |||| ||||||||| || |||||||| |||| ||| |||||| | Sbjct 67090 CCGGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTCGTCCTGGATCTTGGCC 67031 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | ||| | |||||| |||||||||| || | ||||| ||| ||||| ||||| Sbjct 67030 TTCACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAAGGTGATGGTCTTGCCAGTCAGG 66971 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||| Sbjct 66970 GTCTTCACGAAGATCTGCAT 66951 Score = 129 bits (142), Expect = 6e-25 Identities = 152/203 (75%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || || |||||| Sbjct 67376 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGTGGCCA-TCTTCCAGTGGCTTGC 67318 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| ||||||||| || ||||||||||||||||| |||||| || Sbjct 67317 CAGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCT 67258 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | ||||| |||| | |||||||||| || | ||||| ||| ||||||| ||| Sbjct 67257 TCGCGTTCTCAATGGTGTTGCTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGACAGGA 67198 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || ||||| ||||||||| || Sbjct 67197 TCTTCACGAAGATCTGCATGCCT 67175 >seq33511 Length=8354299 Score = 123 bits (136), Expect = 2e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| || ||||| ||| | || | ||||| |||||||| || Sbjct 8199633 GGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTCCAGTCATCCTCCAGCTGCTTTCC 8199574 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 | | || |||||||||||||| ||| |||||||||||||||| |||||| ||| Sbjct 8199573 GGTGAGGATCAGCCGCTGCTGGTCAGGAAGGATGCCTTCCTTGTCCTAGATCTTGGCCTT 8199514 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | || || |||||||||| || | |||| ||| ||||| ||||| || Sbjct 8199513 GACATTCTCGATGGTTTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGT 8199454 Query 133643 TTTTACGAAAATCTGC 133658 || || || |||||| Sbjct 8199453 CTTCACAAAGATCTGC 8199438 >seq17823 Length=3576200 Score = 122 bits (134), Expect = 8e-23 Identities = 146/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || | | | | | || || |||||||||| Sbjct 944366 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGGGTGGCCA-TCTTCCAGCTGCTTGC 944308 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 ||| | | || |||| ||||||||| || || ||||| |||||||| ||| || || Sbjct 944307 CCGTGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCATCCTTGTCCTGGATATTGGCCT 944248 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| |||||| |||||||||| || | ||||| ||| ||||| ||||| | Sbjct 944247 TCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 944188 Query 133642 TTTTTACGAAAATCTG 133657 | || || || ||||| Sbjct 944187 TCTTCACAAAGATCTG 944172 >seq61872 Length=227 Score = 109 bits (120), Expect = 5e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| || ||| ||| || ||||||||||| Sbjct 70 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGCTGCTTGCC 129 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || |||||||| |||||||| ||||||| ||| Sbjct 130 TGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTT 189 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTC 133615 || | ||||| ||||| |||||||||| || Sbjct 190 GACGTTCTCAATGGTGTCACTGGGCTCCACCTC 222 >seq26011 Length=983821 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 5/160 (3%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| || ||||| || | | || || | ||||||||| |||||| ||||||||||| Sbjct 497124 TCCTCCAGTTGCTTTCCAATGAAGATCAGGCTCTGCTGGTCTGGAGGGCTGCCTTCCTTG 497065 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || | |||||| ||||| | || | ||||| ||||||||| |||| |||| | Sbjct 497064 TCTGGGATCTTGGCCTTGACATTCTTGATGGTGTCACTGGGCTCCATCTCGAGAGTGATG 497005 Query 133626 GTTTTG-----CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||| || ||||| || || | ||||||||||| Sbjct 497004 GTCTTGCCTTACCAGTCAGGGTCTTCATTAAAATCTGCAT 496965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482484317226240