Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq7138 221 1e-52 seq22731 203 4e-47 seq131350 149 7e-31 seq16566 145 9e-30 seq121270 118 1e-21 seq14601 107 2e-18 >seq7138 Length=5562 Score = 221 bits (244), Expect = 1e-52 Identities = 606/927 (65%), Gaps = 5/927 (1%) Strand=Plus/Minus Query 162057 CACCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTC 162116 |||||||| || || | |||| ||| || | |||||||| || || ||| || Sbjct 2627 CACCAGGGCTTTGTGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGGGGTCAACATC 2568 Query 162117 CTCATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCC 162176 || ||||| || || || | ||| ||| || || ||||| || | || || Sbjct 2567 TGTGTCAAACTTATTGGCAAAAAAGTGGTGC---TTACGCAGCATCCATTTCAAGTCGCC 2511 Query 162177 CGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCC 162236 ||||| |||||||| || ||||||||||| || ||||| ||||| || | || || Sbjct 2510 AACCCCGAAAACGCACACAGAGCGCACGTGCACCCCACTGCAGGGCGGGTAGGGCGCGCC 2451 Query 162237 ATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTC 162296 | | ||||| || ||| |||| |||||||| || ||||||| || ||| | |||||| Sbjct 2450 CTTGGAAACATCACCTTCGAAGTACTGCCACTTGACAAACCTAGCGACAGCATTCATGTC 2391 Query 162297 GGAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAG 162356 || ||| ||||| | ||| | | | ||||| || | || | || || | Sbjct 2390 AGACAAGTCATACTTATGGTTTGAGGAGAGTGAGCCAGGGACTTCGGGGATCCTTTGGAT 2331 Query 162357 AGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCT 162416 || ||||| |||| || || || || || || || | | |||||||||||||| | Sbjct 2330 GGTGGCCCAGAGGTACTCATCGGGGCTGTATGTGTCTTGGGCCCACTCCATGAACTTCTG 2271 Query 162417 GACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCT 162476 || || || | ||| | || || || ||| | | | |||||| || || Sbjct 2270 GATGTCTTCATTCTCTAGCACATAGCCCACATATTCCCTACTGGCCACAAAGTAGGCACT 2211 Query 162477 ACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTAC 162536 || || || | ||| | | | ||||| |||||||| | || ||||| | | Sbjct 2210 GCCCGAGAAAAGGGGAAATCTGAGTGGAGGCCGCTCTTTGACCAACCCTGTGTTTATCAG 2151 Query 162537 CATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTG 162596 | ||| | || || | || || || ||||||| | ||| ||| | | | Sbjct 2150 CTGTCCGTTAACAACAGCATGACTTTT--TCCACCTTTCTTCTTTATTGGAGGGCATCTT 2093 Query 162597 TTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATT 162656 || ||||| || |||| |||| || || || | | ||| || || || || Sbjct 2092 CTCAGTCTCCAGGTTGTTTTCACCCATGAACAACTCAAGTTTCCTCACGATTTCCAGGTT 2033 Query 162657 GGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAG 162716 ||| || | || || || | || || ||||| || | || ||||| || | || | Sbjct 2032 GGTTTTGATCGGGAAATCCATACCACAAAGATTGATCAAGTACTTCCAGTTTGCACTCAT 1973 Query 162717 TCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACAC 162776 ||| || |||| | ||||| || || ||||| || |||||||| || || || || Sbjct 1972 CTTGTAGAGGTCCTTCATGCAGTTGAGGTCAGCCTGAACCCGACTCCATGAAGCATAAAC 1913 Query 162777 GACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCAC 162836 || ||||||||| |||| ||||||||||| | |||||| || | || ||| |||| Sbjct 1912 CACACTCTCCAACTGGCTGGCCACAAAGACATTATTGAAACAGGATGCAATGCCCGTCAC 1853 Query 162837 GGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGG 162896 || | | || | || | ||| || || || || | |||||| | ||||||||| Sbjct 1852 CGCAGCTAAAAAAGACTCTTCTGATTTTCTGTCCACATGAATGCAGTAGAAATTCTGAGG 1793 Query 162897 GGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGA 162956 |||||||||||||| | || || | ||| || || || || || ||||| ||||| Sbjct 1792 CATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAGA 1733 Query 162957 ATACGCTATGGGGAACTCAGCCTCCTC 162983 ||| || || ||||| || ||||| || Sbjct 1732 ATATGCGATTGGGAAATCCGCCTCTTC 1706 >seq22731 Length=1787800 Score = 203 bits (224), Expect = 4e-47 Identities = 238/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || |||| | || || || || || || ||||| |||| || | || Sbjct 1688160 CATAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAGATATTGAAGAGAC 1688219 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| ||||||| || || ||||| || |||||||| || || | || || || | || Sbjct 1688220 ACATGTAACAGCCCTCATCATCCACTGTTGTGTTCCAGAAGGTGATGGTTGAGTTCCGGA 1688279 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || | || ||||| |||| |||||| || | ||||||||| ||||| || || | Sbjct 1688280 GTCCCAGCTCGGTGATGTTTACCCTGTCCTTATAGGCAGGCTGGACCACAACCCCATGGT 1688339 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||| | ||| |||||||||| || || |||||| | |||||||| ||||| | Sbjct 1688340 TCTTGCTGTAAGTGACCATGTTTTCTGGACTTACAGCCTTCTTTTTCTGCCATGTTACAA 1688399 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | ||| |||| | | ||||| ||||| ||||| || || ||||||||||||| | | Sbjct 1688400 TCAAAGCTTCCTGGGAAGTTTGCAGAGAACATCTCAAGGATGCAGGTGTGTTCAGCAGCT 1688459 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 ||||| || || || ||||| Sbjct 1688460 TTCTTTCATCATGGGTCACCAC 1688481 >seq131350 Length=683 Score = 149 bits (164), Expect = 7e-31 Identities = 238/342 (70%), Gaps = 0/342 (0%) Strand=Plus/Plus Query 162642 CACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTT 162701 ||| || || || ||||| || | || || || | || || ||||| || | || || Sbjct 82 CACGATTTCCAGGTTGGTTTTGATCGGGAAATCCATACCACAAAGATTGATCAAGTACTT 141 Query 162702 CCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACT 162761 ||| || | || | ||| || |||| | ||||| || || ||||| || ||||| Sbjct 142 CCAGTTTGCACTCATCTTGTAGAGGTCCTTCATGCAGTTGAGGTCAGCCTGAACCCGACT 201 Query 162762 CCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGA 162821 ||| || || || || || ||||||||| |||| ||||||||||| | |||||| || Sbjct 202 CCATGAAGCATAAACCACACTCTCCAACTGGCTGGCCACAAAGACATTATTGAAACAGGA 261 Query 162822 AACTATCCCCATCACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCA 162881 | || ||| |||| || | | || | || | ||| || || || || | ||| Sbjct 262 TGCAATGCCCGTCACCGCAGCTAAAAAAGACTCTTCTGATTTTCTGTCCACATGAATGCA 321 Query 162882 GTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATG 162941 ||| | ||||||||| |||||||||||||| | || || | ||| || || || || Sbjct 322 GTAGAAATTCTGAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTG 381 Query 162942 GTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 || ||||| |||||||| || || ||||| || ||||| || Sbjct 382 ATGAACCACTATAGAATATGCGATTGGGAAATCCGCCTCTTC 423 >seq16566 Length=6089551 Score = 145 bits (160), Expect = 9e-30 Identities = 437/663 (66%), Gaps = 15/663 (2%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || || | |||||| || | | || |||| | Sbjct 1092621 TCCAGTTAAAGTAACTAAGGTATAGCTTATTGTTTTTGTCAACTTCTTTCAGGTATTTTG 1092562 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | || | || | |||| Sbjct 1092561 CTAGCTCACTTGGAGAGTTATAATCTTCCACATGAATGAATGAATCAGCTGGAATATAAT 1092502 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || || | ||| | || | ||||||| |||||||| || || Sbjct 1092501 TCTCATAGTTTTCCCTAGACGGTCCCAAAACAACAGGTACCGAACCTGCCAAAAAAGCAT 1092442 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || || |||| | ||||| ||||| | ||||| |||| Sbjct 1092441 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGAATTGAGTTTTCAAATGAAAGATAAAATT 1092382 Query 177127 TACAGGAAGATAGTAGCGGG-ATGAAGTCATCATCGGGTATATAATCTCCTACTACGTTC 177185 | || | ||||| | | ||| || || | | || | ||| ||||| | | | | | Sbjct 1092381 TGCAAGTAGATA-TGGTGGGAATCAAATTCTTTTCATTAACATATTCTCCAAATGCTTGC 1092323 Query 177186 CCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGTG 177244 || || ||| || || || || |||||||| ||| || || || || | || Sbjct 1092322 CCATAGGTATGAATCTCAATACTCTTGCTGAGCTCATTGTAATA-CTTGACCCTGGCATG 1092264 Query 177245 GTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGAT 177303 || |||||| || || || |||||||| || | ||| |||||||| || || | Sbjct 1092263 CTCTGGGTTCCAGTTACTTACAACCCAGCATACCAGCTT-CTCTTTGCTTGGCAC----T 1092209 Query 177304 TCGATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGAG 177362 || | || | || | | || | || | | ||||| ||||| |||||||| || Sbjct 1092208 TCAAAGACAAAGGGGTTTGTGCTCACGGTCAAGAAGCCATAAGGCACTTGAATATCTGAA 1092149 Query 177363 TCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGGC 177420 ||||| | ||| |||| || | ||||| | || || |||| || |||| ||| Sbjct 1092148 TCGCGGCGGTAAGTTAGAGTCAAGTTGAATAAGTGCTCAATACCACTCTTTTG--GGGAG 1092091 Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCG 177480 | | | | || |||||||| |||||||| ||||| || ||||||| ||| |||| | | Sbjct 1092090 TATGAGTTGGGGATTCTAAATTCATCCAAATCCATTTCTGAAAGGGTGGCCTGGCCTGCT 1092031 Query 177481 TAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTT 177540 ||||| | || |||| || || |||| |||||||| | || |||| || || Sbjct 1092030 GAGGTAAATTAGTCAGATCCCAGCTGATGTCTCGGTGGTGAATCAAGACTGCATGGGATT 1091971 Query 177541 TGT 177543 ||| Sbjct 1091970 TGT 1091968 >seq121270 Length=520 Score = 118 bits (130), Expect = 1e-21 Identities = 240/356 (67%), Gaps = 3/356 (1%) Strand=Plus/Minus Query 162057 CACCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTC 162116 |||||||| || || | |||| ||| || | |||||||| || || ||| || Sbjct 501 CACCAGGGCTTTGTGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGGGGTCAACATC 442 Query 162117 CTCATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCC 162176 || ||||| || || || | ||| ||| || || ||||| || | || || Sbjct 441 TGTGTCAAACTTATTGGCAAAAAAGTGGTGC---TTACGCAGCATCCATTTCAAGTCGCC 385 Query 162177 CGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCC 162236 ||||| |||||||| || ||||||||||| || ||||| ||||| || | || || Sbjct 384 AACCCCGAAAACGCACACAGAGCGCACGTGCACCCCACTGCAGGGCGGGTAGGGCGCGCC 325 Query 162237 ATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTC 162296 | | ||||| || ||| |||| |||||||| || ||||||| || ||| | |||||| Sbjct 324 CTTGGAAACATCACCTTCGAAGTACTGCCACTTGACAAACCTAGCGACAGCATTCATGTC 265 Query 162297 GGAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAG 162356 || ||| ||||| | ||| | | | ||||| || | || | || || | Sbjct 264 AGACAAGTCATACTTATGGTTTGAGGAGAGTGAGCCAGGGACTTCGGGGATCCTTTGGAT 205 Query 162357 AGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACT 162412 || ||||| |||| || || || || || || || | | |||||||||||||| Sbjct 204 GGTGGCCCAGAGGTACTCATCGGGGCTGTATGTGTCTTGGGCCCACTCCATGAACT 149 >seq14601 Length=3804423 Score = 107 bits (118), Expect = 2e-18 Identities = 234/345 (68%), Gaps = 8/345 (2%) Strand=Plus/Minus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 ||||||||| ||||||||| | || ||||| || || ||| || | | |||||| Sbjct 1396885 ACCATCTCTGCATTGGTCTTGATAGGGAAGTCTGTCCCACAGGTGTTCAGGAGGTATTTC 1396826 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || || |||| |||||| || || | | ||||||||||| ||||| || | Sbjct 1396825 CAAGGCAC--TGAGCTCCGTAGCAAGTCTTCCATGCAGTTCAGATCAGCCTGCACCCTGG 1396768 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || ||||| || | ||||| | |||| | |||||||| ||| || | Sbjct 1396767 ACCAGGAGGCATACACCACTGTAACCAACTTGCTGGCTATGAAGACATTCGAGAAGCATG 1396708 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACA--TCGGGTCCGCTTTCCTATCTACGTGTAC 162878 | | || | | || ||| || ||| || || | ||| ||| ||||| || Sbjct 1396707 AGGCAATGGCACTGACAGCCTGTTTGAAAGACTCTGGA--GACTTCTGATCCACGTGGAC 1396650 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 ||||||| ||||||||||| || | || | |||||| || || || | || ||||| Sbjct 1396649 ACAGTATATGTTCTGAGGGGCATACACAGCACGCAGTAACCTTTCAAAGTTTTCGATCTT 1396590 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 | || ||||| || || || || |||||||| |||||||| || Sbjct 1396589 CTCATGAACCACCATGGAGTATGCAATGGGGAAGTCAGCCTCTTC 1396545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577311461529600