Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq26070 89.7 1e-12 seq29155 87.8 4e-12 seq30635 84.2 5e-11 >seq26070 Length=15207027 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 131862 TTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTT 131921 |||||||||||||| ||| ||||| || |||||||| ||| | || | || |||| Sbjct 5605470 TTGTAGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCCTTTGCATCAATATTTT 5605411 Query 131922 GGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAG 131981 |||| ||||| || ||| |||||||||| || |||| |||||| | | ||| |||| Sbjct 5605410 GGCTCAAGAAACGAGGACTGATGCCTGGTCTTACATTTTCCAATGAGCTTATCAGTAGAG 5605351 Query 131982 ATGA 131985 |||| Sbjct 5605350 ATGA 5605347 >seq29155 Length=1778819 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 110755 CATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTA 110814 |||||||||| || || ||||||||||||| ||| || ||||| ||| | | |||| | Sbjct 1083330 CATTTGCTATTTACCTGGAACCTTGGCATTTAGACATCTTTGAGTTCCTTG-ACTTAAAA 1083388 Query 110815 AAAATCA-AGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCA 110873 || | || |||| ||||| ||| | || || ||| | || | ||| | |||||| || Sbjct 1083389 AAGAACACAGGAAAGGAAGAGCAACGTGCCCGAGATCTTTTCTTTGCCCTCTGGATTCCA 1083448 Query 110874 GATTTATTCATGAAACGTGT 110893 ||| | ||||||||||| || Sbjct 1083449 GATCTCTTCATGAAACGAGT 1083468 >seq30635 Length=1530594 Score = 84.2 bits (92), Expect = 5e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 131857 AAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTAT 131916 |||| | || || |||||| ||| ||||| || |||||||| || | || |||||| Sbjct 527539 AAGAGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTTTCCGGATCATTTGCTGCTAT 527598 Query 131917 CTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTC 131976 |||||||| ||||| | || | |||||||||||| | || || ||| || | ||| Sbjct 527599 ATTTTGGCTAAAGAAAAGAGGTCTCATGCCTGGACTCACTTTTTCAAATGAACTGATCAG 527658 Query 131977 GAGAGATGAAG 131987 |||||||||| Sbjct 527659 CAGAGATGAAG 527669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1184456228899936