Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq22538 113 1e-19 seq10252 100 7e-16 seq33490 96.9 8e-15 seq3476 95.1 3e-14 seq15461 86.0 1e-11 seq23020 84.2 5e-11 >seq22538 Length=2998977 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || | || ||||||||| || || |||||||| ||||| || || ||| Sbjct 2995375 AAGATCCAGCATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGTAAG 2995434 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||| ||||| | |||||| | || |||||||| || || ||||| || |||||| Sbjct 2995435 CAGTTGGAGTATGGACGAACTTTGTCTGACTACAACGTTCAAAATGAGTCCACCCTTCAC 2995494 Query 206374 CTTGTTTTGAGACTTCG 206390 ||||| ||||||||||| Sbjct 2995495 CTTGTGTTGAGACTTCG 2995511 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||||||||| || ||||| || || || || ||||||| |||||| Sbjct 2995511 CGAAGTCTCAACACAAGGTGAAGGGTGGACTCATTTTGAACGTTGTAGTCAGACAAAGTT 2995452 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||| |||| |||||| || || ||||| || | ||| ||| Sbjct 2995451 CGTCCATACTCCAACTGCTTACCAGCAAAGATCAGTCTTTGCTGA 2995407 >seq10252 Length=5655956 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 |||||||||| |||| ||||| |||||||| || || ||||| ||||||| |||||| Sbjct 4525580 CGAAGTCTCAGTGCAAGATGAAGGGTAGACTCCTTTTGAACATTGTAGTCAGACAAAGTT 4525639 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||| ||||||||||| || || ||||| ||| ||| ||| Sbjct 4525640 CGTCCATCCTCCAGCTGCTTACCAGCAAAGATCAGCTTTTGCTGA 4525684 >seq33490 Length=7594977 Score = 96.9 bits (106), Expect = 8e-15 Identities = 155/219 (71%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||||| ||| || || ||||| || || |||| | | || ||| || | Sbjct 4307185 CAGAT-TTTTGTAAAGACCCTTACAGGGAAGACCATCATGCTCAAGGTTGAACCCTCATA 4307127 Query 206232 CACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || ||||| ||||| || || || ||||||||| || || || Sbjct 4307126 CACTATATAAAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCA 4307067 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || || ||||| || || ||||||||||| |||||| | |||||| | || |||||| | Sbjct 4307066 CAGGCTGATCTTTGCTGGTAAGCAGTTGGAGGATGGATGAACTTTGTCTGACTACAACAT 4307007 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| || ||||| ||||| || |||||||| Sbjct 4307006 -CAAAAGGAGTCCACCCTTCATCTTGTGTTAAGACTTCG 4306969 >seq3476 Length=2418285 Score = 95.1 bits (104), Expect = 3e-14 Identities = 104/137 (76%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || | || ||||||||| |||| || ||||| || |||| || || ||| Sbjct 203849 AAGATCCATGGTAAGGAAGGAATTCTGCCTGATCAGCAAAGGCTGCTCTTTGCTGGTAAG 203908 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||| ||||| | |||||| | || | |||| | || || ||||| || ||||| Sbjct 203909 CAGTTGGAGGATGGGTGAACTTTGTCTGACTGCAACAT-CAAAAGGAGTCCACCCTTCAT 203967 Query 206374 CTTGTTTTGAGACTTCG 206390 ||||| ||||||||||| Sbjct 203968 CTTGTGTTGAGACTTCG 203984 >seq15461 Length=7213747 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || |||| |||| || || ||||| || ||||| || | ||| Sbjct 6276273 AAGATCCAGGATAAGGAAGAAATTCCTCCTGATCAGCAAAGGCTGATCTTTGCTGATAAG 6276332 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||| |||||| | |||||| | || |||||| | || | ||||| || ||||| Sbjct 6276333 CAGTTGGAGGATGGATGAACTTTGTCTGACTACAACATTCAAAGGGAGTCCACCCTTCAT 6276392 Query 206374 CTTGTTTTGAGACTTCG 206390 ||| | ||||| ||||| Sbjct 6276393 CTTCTGTTGAGGCTTCG 6276409 >seq23020 Length=748909 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| ||||| |||| Sbjct 60989 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGCGACACCATCGAGAAC 61048 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || || ||| || || || |||||| Sbjct 61049 GTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGACCAGCAGAGGCTGATCTTC 61108 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | ||||||||| ||||||| ||||| Sbjct 61109 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTATCTGATTACAACATCCAGAAGGAGTCC 61168 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 61169 ACCCTGCACCTCGT 61182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179474141164896