Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq14636 109 2e-20 seq6686 104 7e-19 seq5015 100 9e-18 seq4683 100 9e-18 seq18941 98.7 3e-17 seq16386 98.7 3e-17 seq29155 84.2 7e-13 >seq14636 Length=4088053 Score = 109 bits (120), Expect = 2e-20 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2764 TTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 || |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 3317975 TTGTGGCTGAAATAGCTCAGTTGGGAGAGCATCAGACTGAAGATCTAAAGGTCCCTGGTT 3318034 Query 2824 CAACCCCGGGCTT 2836 |||||| ||| || Sbjct 3318035 CAACCCTGGGTTT 3318047 >seq6686 Length=554112 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 403007 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 403066 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 403067 CCGGGTTTCGGC 403078 Score = 95.1 bits (104), Expect = 4e-16 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| || |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 508019 TGGCCGAGATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 507960 Query 2827 CCCCGGG 2833 |||||| Sbjct 507959 TCCCGGG 507953 >seq5015 Length=2278188 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 383714 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 383773 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 383774 CCCGGGTTTCGGC 383786 >seq4683 Length=705728 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 311367 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 311426 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 311427 CCCGGGTTTCGGC 311439 >seq18941 Length=1285883 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 549717 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 549658 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 549657 CCGGGTTTCGGC 549646 Score = 87.8 bits (96), Expect = 6e-14 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||| || |||||||||||||||||||||| ||||||| |||||| ||||||||||||| | Sbjct 539918 GCTAAAATAGCTCAGTTGGGAGAGCATTACACTGAAGGTCTAAAAGTCCCTGGTTCAATC 539859 Query 2829 CCGGGCTT 2836 || || || Sbjct 539858 CCAGGTTT 539851 >seq16386 Length=4700455 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 613292 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 613351 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 613352 CCGGGTTTCGGC 613363 >seq29155 Length=1778819 Score = 84.2 bits (92), Expect = 7e-13 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 2771 TGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCC 2830 |||| ||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||| Sbjct 901205 TGAAATAGCTCAGTTGGGAGAGCATTAGACAGAAGAAGTAAAGATCCCTGGTTCAATCCC 901264 Query 2831 GGGCTT 2836 || || Sbjct 901265 TGGTTT 901270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15822734135520