Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq22731 264 1e-65 seq15815 197 2e-45 seq5010 154 2e-32 seq32768 145 9e-30 seq10112 123 3e-23 seq10236 100 3e-16 >seq22731 Length=1787800 Score = 264 bits (292), Expect = 1e-65 Identities = 250/319 (78%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||| ||||| || |||||||||||| || || ||| ||| ||| || ||| Sbjct 1688481 GTGGTGACCCATGATGAAAGAAAGCTGCTGAACACACCTGCATCCTTGAGATGTTCTCTG 1688422 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || ||||| ||||| | ||||||| || |||||||||| ||| | | |||||| Sbjct 1688421 CAAACTTCCCAGGAAGCTTTGATTGTAACATGGCAGAAAAAGAAGGCTGTAAGTCCAGAA 1688362 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | |||| ||||| |||| ||||| ||||||||||| || |||||||||| | Sbjct 1688361 AACATGGTCACTTACAGCAAGAACCATGGGGTTGTGGTCCAGCCTGCCTATAAGGACAGG 1688302 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||| |||| ||||||| |||||||||||||| || ||||| || || | Sbjct 1688301 GTAAACATCACCGAGCTGGGACTCCGGAACTCAACCATCACCTTCTGGAACACAACAGTG 1688242 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || ||||| || |||| || ||||| || | |||||| |||||||| ||||| || Sbjct 1688241 GATGATGAGGGCTGTTACATGTGTCTCTTCAATATCTTTGGTTCTGGGAAGATCTCAGGA 1688182 Query 171372 GTGGCCTGCCTCACCCTCT 171390 |||||||||||||||| Sbjct 1688181 ACAGCCTGCCTCACCCTCT 1688163 Score = 159 bits (176), Expect = 4e-34 Identities = 187/253 (74%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || || || || || || | |||||| |||||||| || ||||| ||| Sbjct 1685926 GTACAGCCCATAGTATTCCTTCACTACAACTATTTTGAAGACCACCTAAATATCACTTGT 1685867 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||| ||| ||||| | ||| || | |||||| | ||| ||| |||||| Sbjct 1685866 TCTGCCACTGCTCGCCCAGCCCCTGCCATCTCCTGGAAGGGCACTGGGACAGGAATTGAG 1685807 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || |||| ||| | || || || |||||||| || ||||| ||||| | |||| Sbjct 1685806 AATAGTACTGAGAGCCAGTCACACTCAAATGGAACCACATCTGTGACCAGCATCCTCCGG 1685747 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || ||||||||||||| |||| |||| ||||| || |||||||| |||| | ||||||| Sbjct 1685746 GTCAAAGACCCCAAGAATCAGGTGGGGAAGGAAGTGATCTGCCAGGTGTTGTACCTGGGG 1685687 Query 171633 AATGTAACTAACT 171645 | ||| | | ||| Sbjct 1685686 ACTGTCATTGACT 1685674 >seq15815 Length=3425397 Score = 197 bits (218), Expect = 2e-45 Identities = 482/718 (67%), Gaps = 27/718 (4%) Strand=Plus/Plus Query 146867 TCAAAATCTT--GAGCTTGGGGAAGGGTCGGGGGT-TC-CTGGCCAGCTGAATTTTCAGG 146922 |||||| || |||||| || || |||| || | || |||| |||||||||||||| Sbjct 2366377 TCAAAAGATTCCGAGCTTTGGAAAAGGTCTTGGTTCTCGCTGG--AGCTGAATTTTCAGT 2366434 Query 146923 GGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGC 146982 ||||| | ||| || ||||| || | || || |||| | | ||||| || || | | Sbjct 2366435 GGCTCAATGTGATTCAGGTAAACATATGCATCTCCCAAAATA-GTACAAAATCACCTGAC 2366493 Query 146983 TTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAG 147042 || ||| | || | ||| || | ||||||| | ||| | | |||||||| ||||||||| Sbjct 2366494 TTCAGGTCTGTGATGTGTGCGATCATGTAGCTTAGCGGACA-TAGCTGGCGATGTTGAAG 2366552 Query 147043 GGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCG 147102 || || ||||||||| | | || ||||||||||| || ||||| || |||||||| | Sbjct 2366553 GGCACACCCAGGCCCGTACCTCCTGACCTCTGGTAAAGTTGGCAGGACAGCTCCCCATTC 2366612 Query 147103 GCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCG 147162 |||| || |||| ||| |||| || || | | ||||||||| || || || Sbjct 2366613 ACCACATAGAACTAGCAGAGGACTTGACAAGAAGCCAGCGCCATCAGAGGAAGATCTTTT 2366672 Query 147163 GGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATA 147222 ||||||||||| || || || || || | ||| | || || || ||| Sbjct 2366673 GGGTTCCAGGC----AC--ACATGATTCTTCTGTCAGTGTTGGTTTTGATGGTATCAATA 2366726 Query 147223 ACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTG 147282 || | ||||| ||| | || || || ||| | | | || ||| Sbjct 2366727 ACTTTCTGCAGCTTGTCTGCTCCTTGACCTGAGTAATCAGAATCCATATCTTTGTAGTCT 2366786 Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCT---- 147338 || ||||| ||| |||||||||| || || ||||| | |||||| | |||||| Sbjct 2366787 GCTCCAAAATGCATCCACTGGAAACCATAAACTGGACTCAGGTCCC----CTTTCTGCCG 2366842 Query 147339 -GTGCGAGAAGCCC--GCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCC 147395 ||| ||||| ||| | | | | ||||| || |||| || | ||| |||||||| Sbjct 2366843 AGTG-GAGAATCCCTAGGCTG-TCCAGAAAGTCCCGGGATCCATTGGCATCCCAGATTTT 2366900 Query 147396 CACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTC 147455 | | ||| ||| ||| || || |||| | ||||| ||| || ||||| |||| ||| Sbjct 2366901 CTCCCCCCTGGAGGACAGTTCTTTAGCATTTGTGGATCCCTTAATAAACCATAGCAACTC 2366960 Query 147456 CTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAG 147515 ||||||||| ||| |||| || || | |||| || ||||| || || | || ||| | Sbjct 2366961 CTCCAAAACACCCTTCCAGAATACTCGTTTGGCTGTGAGCAGAGGAAATTCATCTCTCGG 2367020 Query 147516 CGAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTCCTCC 147573 || | |||||| | | ||| |||| | || ||||| || | ||||||| Sbjct 2367021 GCTGTAGCACGCCTGCATGCGGAGCACCAACAGGGCGCTGGTGCCAGTGCGGTCCTCC 2367078 >seq5010 Length=4126613 Score = 154 bits (170), Expect = 2e-32 Identities = 133/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| | |||||||| |||||||| Sbjct 1433160 CTTCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAA 1433219 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || || |||||||| || || ||||||||||| |||||||| || |||||||| | Sbjct 1433220 GGGCACACCAAGGCCCATATCTCCTGACCTCTGGTAAAGCTGGCAGGACAGCTCCCCATT 1433279 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||||| |||||||| ||| ||||| || ||||| ||||| Sbjct 1433280 CACCACGTAGAACTGGCAGAGGGCATGGCAAGGAGGCAGTGCCAT 1433324 Score = 86.0 bits (94), Expect = 7e-12 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTC-TGTG 147341 |||||||| ||||||||||||||||| || ||||| |||||||| || || | ||| Sbjct 1439414 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAGGTCCCCTTCCTCCCGAGTG 1439473 Query 147342 CGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401 ||||| ||| | | ||||| || |||| || | ||| |||||||| |||||| Sbjct 1439474 -GAGAATCCCAGGCTGTCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCC 1439532 Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 | ||| ||| || || |||| | || || ||| ||| || Sbjct 1439533 CCTGGAGGACAGTTCTTTAGCATTTGTAGATCCCTGGAAGA 1439573 >seq32768 Length=2389516 Score = 145 bits (160), Expect = 9e-30 Identities = 132/167 (79%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 ||||||||||||||||||| ||||||||||||||||| ||||||||| ||| ||| |||| Sbjct 439731 AGGGTTACTTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTACCTGGTGGAAGTGA 439790 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || |||| || ||||| || ||||| || || | Sbjct 439791 TGCCCCAGGCGGAGAACCA---------TGGA---CCAGACATCAAAGAGCACGTGAATT 439838 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 ||||||| || ||||| |||||||| || || | |||||||| ||| Sbjct 439839 CTCTGGGAGAGAAGCTGAAGACCCTAAGGCTGCGCCTGCGGCGCTGT 439885 >seq10112 Length=11852372 Score = 123 bits (136), Expect = 3e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 146875 TTGAGCTTGGGGAAGGGTCGGGGGTT--CCTGGCCAGCTGAATTTTCAGGGGCTCCACGT 146932 || ||||| || || |||| || | ||||| |||||||||||||| |||| | | Sbjct 4836207 TTAAGCTTTGGAAAAGGTCTTGGTTCTCCCTGG--AGCTGAATTTTCAGTGGCTAGATAT 4836264 Query 146933 GGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGG 146992 || ||||| || | || || |||| || || || || || || | ||| ||||| | Sbjct 4836265 AATTCAGGTAAACACGTGCATCTCCCAAAGTATGTACGAAATCACCTGACTTCAGGCCTG 4836324 Query 146993 TCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCA 147052 | | ||| || | |||||||||||| | | |||||| ||||||||||| || |||| Sbjct 4836325 TGATGTGTGCTATCATGTAGGTGAGTGGGGCATAGCTGCAGATGTTGAAGGGCACACCCA 4836384 Query 147053 GGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086 ||||||| || || | || ||||||||||||||| Sbjct 4836385 GGCCCATATCTCCTGCCCCCTGGTACAGCTGGCA 4836418 >seq10236 Length=981618 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| | | ||||| ||||| || || || ||||| Sbjct 192593 GTACTCCCTGGTGTTCATCATTGGCGTGTTGGGCAACTTACTGGTAATTCTGGTGCTCAT 192652 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||||||||| | | | |||||||| ||||| |||||||||||||||| | ||| Sbjct 192653 CCAGTACAAGAGGCCCCGAAGCATGACCAGCATCTACCTGTTCAACCTGGCCATCTCTGA 192712 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||| | | | ||||| | ||||| |||||| ||| Sbjct 192713 CCTGGTCTTCCTCTTCACTTTGCCCTTCTGGATTGACT 192750 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| | | ||||| |||||| | || || ||||| Sbjct 208575 GTACTCCCTGGTGTTCATCATTGGTGTGGTGGGCAACATACTGGTGGTACTGGTGCTCAT 208634 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | |||||||||||||| | |||||||| ||||| |||||||||||||| | ||| Sbjct 208635 ACAGTACAAGAGGCTCCAAAGCATGACCAGCATCTATTTGTTCAACCTGGCCATCTCTGA 208694 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||| | | | ||||| | ||||| |||||| ||| Sbjct 208695 CCTGGTCTTCCTCTTCACTTTGCCCTTCTGGATTGACT 208732 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||||||||| | ||| ||||| ||||||||| ||||||||| || |||||||| | Sbjct 209291 TGGACATGGCCATACAAGTGACTGAGGTGATCGCCTACACCCACTGTTGTGTCAACCCAG 209350 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCTTCAG 9426 ||||||| | |||||||| || ||||| || |||| ||| Sbjct 209351 TCATCTATGTCTTTGTGGGTGAGCGGTTCCGGAAGTACCTACAG 209394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582357667046400