Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq23020 116 3e-21 seq17823 111 1e-19 seq9583 105 6e-18 seq61872 102 7e-17 seq33511 95.1 1e-14 seq15461 86.0 6e-12 seq10252 86.0 6e-12 >seq23020 Length=748909 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | || || | || ||||||||||| || || || Sbjct 61165 CTCCTTCTGGATGTTGTAATCAGATAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAA 61106 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || |||||||||| |||||| ||||| | Sbjct 61105 GATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 61046 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | |||||||||| ||||| || || || |||| || ||||| Sbjct 61045 CTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 60986 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 60985 GAAGATCTGCAT 60974 >seq17823 Length=3576200 Score = 111 bits (122), Expect = 1e-19 Identities = 140/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCA-AGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAA 35603 |||||| || |||||||| || | || ||| | || | || ||||||||||| |||| | Sbjct 944360 CTCCTTCTGGATGTTGTAGTCAGACAGAGGGTGGC-CATCTTCCAGCTGCTTGCCCGTGA 944302 Query 35604 ATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAG 35663 | |||| || ||||||||| | |||| || ||||||||| ||| || ||||| Sbjct 944301 AGATCAGCCTCTGCTGGTCAGGGGGAATGCCATCCTTGTCCTGGATATTGGCCTTCACGT 944242 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | |||||||| | |||||||||| ||||| || || || |||| || |||| Sbjct 944241 TCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 944182 Query 35724 CAAATATCTG 35733 |||| ||||| Sbjct 944181 CAAAGATCTG 944172 >seq9583 Length=785227 Score = 105 bits (116), Expect = 6e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCA-AGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAA 35603 |||||| || |||||||| || | || | | || | || ||||||||||| || |||| Sbjct 67142 CTCCTTCTGGATGTTGTAGTCAGACAGAACGTGGC-CATCTTCCAGCTGCTTGCCGGCAA 67084 Query 35604 ATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAG 35663 | |||| || ||||||||| | || | || ||||| |||| |||||| ||||| Sbjct 67083 AGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTCGTCCTGGATCTTGGCCTTCACGT 67024 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | |||||||| | ||||| |||| ||||| || || || |||| || |||| Sbjct 67023 TCTCGATGGTGTCGCTGGGCTCCACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCA 66964 Query 35724 CAAATATCTGCATTCTG 35740 | || ||||||||| || Sbjct 66963 CGAAGATCTGCATTTTG 66947 >seq61872 Length=227 Score = 102 bits (112), Expect = 7e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || |||| ||||||||||| || ||||| Sbjct 76 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGCTGCTTGCCTGCAAA 135 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || |||||||||| ||||||| ||| | | Sbjct 136 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTT 195 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCA 35693 | | ||||| || | |||||||||| Sbjct 196 CTCAATGGTGTCACTGGGCTCCACCTCCA 224 >seq33511 Length=8354299 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| |||| | ||| | || || ||||||||||| || | | Sbjct 8199627 CTCTTTCTGGATGTTGTAGTCGGAAAGGGTCCAGTCATCCTCCAGCTGCTTTCCGGTGAG 8199568 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||||||| | | | | || ||||||||| |||||| ||| | | | Sbjct 8199567 GATCAGCCGCTGCTGGTCAGGAAGGATGCCTTCCTTGTCCTAGATCTTGGCCTTGACATT 8199508 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | |||||||| | ||||| || || || |||| || ||||| Sbjct 8199507 CTCGATGGTTTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCAC 8199448 Query 35725 AAATATCTGC 35734 ||| |||||| Sbjct 8199447 AAAGATCTGC 8199438 >seq15461 Length=7213747 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || |||| ||||||||||||| || | | Sbjct 6276415 CCACCACGAAGCCTCAACAGAAGATGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGAC 6276356 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || |||| | || |||| ||||||| | ||||| |||| || ||||| || | |||| Sbjct 6276355 AAAGTTCATCCATCCTCCAACTGCTTATCAGCAAAGATCAGCCTTTGCTGATCAGGAGGA 6276296 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | ||||| ||| |||||| || | | || | | ||||| | ||| ||| Sbjct 6276295 ATTTCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAACC 6276236 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | | | |||| || | ||| | | || || || || |||||||| Sbjct 6276235 TTGAGCCTGATGGTCTGCCCCATAAGGGTCTTTACTAAAATCTGCAT 6276189 >seq10252 Length=5655956 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||| | | ||| | ||| ||||||||||| ||||| || | | Sbjct 4525574 CCACCACGAAGTCTCAGTGCAAGATGAAGGGTAGACTCCTTTTGAACATTGTAGTCAGAC 4525633 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || ||||| | || |||||||||||||| ||||| |||| | ||||| || | |||| Sbjct 4525634 AAAGTTCGTCCATCCTCCAGCTGCTTACCAGCAAAGATCAGCTTTTGCTGATCAGGAGGA 4525693 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| || | | || | | |||| | ||| ||| Sbjct 4525694 ATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAATGTCCAAAGGTTCAACC 4525753 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCT 35739 || | ||||| || || ||| | | || || | || |||||||| || Sbjct 4525754 TCGAGTGTGATGGTCTTTCCCATAAGGGTCTTTATGAAAATCTGCATCCT 4525803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449920322638080