Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq23020 111 2e-19 seq16386 107 2e-18 seq61872 98.7 1e-15 seq9583 91.5 1e-13 >seq23020 Length=748909 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| ||||| || | |||||||| || ||||| ||||| || ||||||||||| Sbjct 60972 CCTCCCCTGAGACGGAGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 60913 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||||||||| ||||| |||| | |||||| || || || Sbjct 60912 AGAGTGCGGCCATCTTCTAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 60853 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || || | |||||| | ||||| Sbjct 60852 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACC 60793 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || ||||| | || || ||||| || ||||||||| Sbjct 60792 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 60742 >seq16386 Length=4700455 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | ||| ||||| || ||||| ||||| || |||||||||||| Sbjct 632482 CCACCCCTGAGGCGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 632423 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || || || ||||||||||| |||| |||||| ||||| | Sbjct 632422 AGGGTGCGGCCGTCTTCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGG 632363 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| || || || ||| ||||| || | ||||| | ||||| Sbjct 632362 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 632303 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| || ||||| Sbjct 632302 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 632256 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | ||| ||| | || ||||| ||||| || ||| |||||||| Sbjct 631342 CCACCCCTGAGGCGGATCACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGAC 631283 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || || || ||||||||||| |||| | |||||| ||||| | Sbjct 631282 AGGGTGCGGCCGTCTTCCAGATGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGTGG 631223 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| || || || ||| ||||| || | ||||| | ||||| Sbjct 631222 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 631163 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || ||||| || || || | || || ||||| || |||||| Sbjct 631162 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 631115 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | ||| ||| | || ||||| ||||| || ||| |||||||| Sbjct 631570 CCACCCCTGAGGCGGATCACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGAC 631511 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || || || ||||||||||| |||| |||||| ||||| | Sbjct 631510 AGGGTGCGGCCGTCTTCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGG 631451 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| || || || ||| ||||| || | || || | ||||| Sbjct 631450 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACC 631391 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| || ||||| Sbjct 631390 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 631344 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | ||| ||| | || ||||| ||||| || ||| |||||||| Sbjct 631798 CCACCCCTGAGGCGGATCACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGAC 631739 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || || || ||||||||||| |||| |||||| ||||| | Sbjct 631738 AGGGTGCGGCCGTCTTCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGG 631679 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| || || || ||| ||||| || | || || | ||||| Sbjct 631678 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACC 631619 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| || ||||| Sbjct 631618 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 631572 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | ||| ||| | || ||||| ||||| || ||| |||||||| Sbjct 632026 CCACCCCTGAGGCGGATCACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGAC 631967 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || || || ||||||||||| |||| |||||| ||||| | Sbjct 631966 AGGGTGCGGCCGTCTTCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGG 631907 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| || || || ||| ||||| || | || || | ||||| Sbjct 631906 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACC 631847 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| || ||||| Sbjct 631846 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 631800 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | ||| ||| | || ||||| ||||| || ||| |||||||| Sbjct 632254 CCACCCCTGAGGCGGATCACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGAC 632195 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || || || ||||||||||| |||| |||||| ||||| | Sbjct 632194 AGGGTGCGGCCGTCTTCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGG 632135 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| || || || ||| ||||| || | || || | ||||| Sbjct 632134 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACC 632075 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| || ||||| Sbjct 632074 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 632028 >seq61872 Length=227 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | ||| ||||| || ||||| ||||| || |||||||||||| Sbjct 41 CCACCCCTGAGGCGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 100 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| ||||||||||| |||| | |||||| || || || Sbjct 101 AGGGTGCGGCCGTCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 160 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGAC 134638 ||||| || || || || || ||| ||||| Sbjct 161 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGAC 192 >seq9583 Length=785227 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| ||||| || | |||||||| || ||||| ||||| || ||||||||||| | | Sbjct 67177 CCTCCCCTGAGACGGAGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 67118 Query 134546 A-ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | | ||| | | || || ||||| ||||| ||||| |||| | |||||| || || | Sbjct 67117 AGAACGTG-GCCA-TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGTG 67060 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | ||||| || | || || || || || || || | |||||| | |||| Sbjct 67059 GGATGCCCTCCTCGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCA 67000 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 | || | || ||||| || || || | || || ||||| || ||||||||| Sbjct 66999 CTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTG 66947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504419342219520