Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq26070 86.0 8e-12 seq29155 82.4 1e-10 >seq26070 Length=15207027 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 122370 ATAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 122429 ||| ||||| || | |||||||||||||||||||||||| || || ||| |||||||| Sbjct 5603806 ATATTCCCCTACTCTCTTCTCAAAGAAGTTGGTCTTCCCTTCCAGTGAAATATTTTCCAT 5603865 Query 122430 AAAGTCAAATGGATT 122444 |||||||||||||| Sbjct 5603866 GAAGTCAAATGGATT 5603880 >seq29155 Length=1778819 Score = 82.4 bits (90), Expect = 1e-10 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || || ||||||| |||||||| || | ||| | || || || || Sbjct 1086504 CTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTACTGCATTTGATGGTTCC 1086445 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| ||||| |||||| ||| || | ||| |||||||||||||| || || || Sbjct 1086444 CAGGTTCTGCTGGTTGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACC 1086385 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 ||||| ||||| || | || || || | ||||| Sbjct 1086384 AGTCTCTGTCTGAGACTCGATGATGGCATACCAAA 1086350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626815376409600