Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq29155 91.5 2e-13 seq26070 82.4 9e-11 >seq29155 Length=1778819 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 104888 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGAC 104947 ||| | || || || ||||||| || ||||||||||| ||||||||||| |||||||| Sbjct 1086352 TGGTATGCCATCATCGAGTCTCAGACAGAGACTGGTACCCCATACATGCTCTACAAAGAT 1086411 Query 104948 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGT 105007 ||||||||| ||||| || || |||| |||| ||||| | || || || Sbjct 1086412 TCCTGTAACCGGAAGAGCAACCAGCAGAACCTGGGAACCATCAAATGCAGTAACCTGTGC 1086471 Query 105008 ACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 |||||||| | || | ||| |||||||||| Sbjct 1086472 ACAGAAATAGTAGAGTATACCAGCAAAGATGAG 1086504 >seq26070 Length=15207027 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCT 94874 || ||||| ||| || || |||||||| ||||||||||| ||| | || | |||||| Sbjct 5605465 GCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCCTT-TGCATCAATATTTTGGCT 5605407 Query 94875 CAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGA 94934 |||||| ||||| || ||||| ||||| || ||||| ||||||||| | | || || Sbjct 5605406 CAAGAAACGAGGACTGATGCCTGGTCTTACATTTTCCAATGAGCTTATCAGTAGAGATGA 5605347 Query 94935 GG 94936 || Sbjct 5605346 GG 5605345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582130907178240