Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq5010 102 6e-17 seq15815 100 2e-16 seq10112 86.0 5e-12 >seq5010 Length=4126613 Score = 102 bits (112), Expect = 6e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || ||||||||||| |||||||| ||||| || || || || ||||| || |||||| Sbjct 1433167 CCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACA 1433226 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || |||||||||||||| || || || || ||||| || || || | | ||| Sbjct 1433227 CCAAGGCCCATATCTCCTGACCTCTGGTAAAGCTGGCAGGACAGCTCCCCATTCACCACG 1433286 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || || || || || |||| |||||||||| ||||||| Sbjct 1433287 TAGAACTGGCAGAGGGCATGGCAAGGAGGCAGTGCCATC 1433325 >seq15815 Length=3425397 Score = 100 bits (110), Expect = 2e-16 Identities = 410/632 (65%), Gaps = 22/632 (3%) Strand=Plus/Plus Query 111667 AGTTTTGGAAAGGGGGTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTT 111726 || |||||||| || | || | ||| ||||| | || | |||| |||||||| Sbjct 2366390 AGCTTTGGAAAAGGTCTTGGTTCTCGCTGGAGCTGAATTTTCAGTGGCTCAATGTGATTC 2366449 Query 111727 AAATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATG 111786 | ||||||| |||||||| | | | | | || || | | || || | |||||| Sbjct 2366450 AGGTAAACATATGCATCTCCCAAAATA-GTACAAAATCACCTGACTTCAGGTCTGTGATG 2366508 Query 111787 TGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCC 111846 ||||| |||||||| | || ||| || || || ||||| || |||||||| |||||| Sbjct 2366509 TGTGCGATCATGTAGCTTAGCGGACA-TAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 2366567 Query 111847 ATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGA 111906 || |||| || || || || || || || || || | | |||||| || | Sbjct 2366568 GTACCTCCTGACCTCTGGTAAAGTTGGCAGGACAGCTCCCCATTCACCACATAGAACTAG 2366627 Query 111907 CAAAGTACATGACAAGGAGGCAATGCCATCCCATTCATAAA----GGGTCCCCATGCACA 111962 || || || ||||||| || || |||||| | | | |||| || | ||||| Sbjct 2366628 CAGAGGACTTGACAAGAAGCCAGCGCCATCAGAGGAAGATCTTTTGGGTTCC-AGGCACA 2366686 Query 111963 CATGATCATCCTTCTG-CTGTAGCGATTATGTTCAATGTCGTGTATGACATTCAAGAGCT 112021 |||||| |||||| | || | || || ||| | || || ||| |||| Sbjct 2366687 CATGATT---CTTCTGTCAGTGTTGGTTTTG----ATGGTATCAATAACTTTCTGCAGCT 2366739 Query 112022 GGTCTATCCCTTTACCAGTATAATCCGCCTGACATC-CAGTGTATGTTGCCCCATAGTGT 112080 |||| |||| ||| | ||||| | | ||| | |||| ||| ||| | || Sbjct 2366740 TGTCTGCTCCTTGACCTGAGTAATCAGAATC-CATATCTTTGTAGTCTGCTCCAAAATGC 2366798 Query 112081 CTCCATTGGAATCCATAAATAGGCCCCAGATCTCCCGGG-GCTGTATCTGGA-AATTGCT 112138 |||| ||||| ||||||| || | ||| || || || | | ||| ||| || Sbjct 2366799 ATCCACTGGAAACCATAAACTGGACTCAGGTCCCCTTTCTGCCGAGT--GGAGAATCCCT 2366856 Query 112139 CT-CTATTCAACAAATCACTTCTAATATGAGGATTCCAAATCTTCACTCCTTTAGATGAT 112197 || | || || || | || | || ||| || ||| | || | || || Sbjct 2366857 AGGCTGTCCAGAAAGTCCCGGGATCCATTGGCATCCCAGATTTTCTCCCCCCTGGAGGAC 2366916 Query 112198 AACTCTCTTGCATTTGTGGATCCTCTAATAAACCATAGCAATTCTTCCACAACCCCTTTC 112257 | ||| | |||||||||||||| |||||||||||||||| || |||| ||| || ||| Sbjct 2366917 AGTTCTTTAGCATTTGTGGATCCCTTAATAAACCATAGCAACTCCTCCAAAACACCCTTC 2366976 Query 112258 CAGTACACTCTTTTAGTAGTTAGCAGTGGAAA 112289 ||| | |||| ||| | || ||||| ||||| Sbjct 2366977 CAGAATACTCGTTTGGCTGTGAGCAGAGGAAA 2367008 >seq10112 Length=11852372 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 111663 TTTTAGTTTTGGAAAGGGGGTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTG 111722 ||| || |||||||| || | || | || ||||| | || | |||| || | Sbjct 4836206 TTTAAGCTTTGGAAAAGGTCTTGGTTCTCCCTGGAGCTGAATTTTCAGTGGCTAGATATA 4836265 Query 111723 ATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGT 111782 ||| | |||||| | |||||||| | | ||| | || || | | || || || || Sbjct 4836266 ATTCAGGTAAACACGTGCATCTCCCAAAGTATGTACGAAATCACCTGACTTCAGGCCTGT 4836325 Query 111783 GATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCA-ATGTTAAATGGCACACCTA 111841 ||||||||| |||||||| |||||| | || || ||| ||||| || |||||||| | Sbjct 4836326 GATGTGTGCTATCATGTAGGTGAGTGGGGCATAGCT-GCAGATGTTGAAGGGCACACCCA 4836384 Query 111842 GGCCCATATCTCCCGATCTTTGATATAGCTGACA 111875 ||||||||||||| | | || || ||||| || Sbjct 4836385 GGCCCATATCTCCTGCCCCCTGGTACAGCTGGCA 4836418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391205304909088