Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq11712 95.1 1e-14 seq7841 86.0 7e-12 >seq11712 Length=7557966 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| ||||| || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 1991125 GTGAAAATGTAACGAGGGCTCGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 1991066 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| ||| | ||| | |||||| ||||| || ||||| |||| ||||||| Sbjct 1991065 CCGATGGGCTGGAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGGGCCAGATTCACA 1991006 Query 152149 ATCGT 152153 ||||| Sbjct 1991005 ATCGT 1991001 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||| |||||||| ||||||||| ||| || || || || || Sbjct 1991125 GTGAAAATGTAACGAGGGCTCGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 1991066 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | |||| | | ||| | |||||| ||||||||||| || |||| || ||| Sbjct 1991065 CCGATGGGCTGGAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGGGCCAGATTCACA 1991006 Query 117425 ATCGT 117429 ||||| Sbjct 1991005 ATCGT 1991001 >seq7841 Length=541876 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || || ||||| |||| || |||| ||||||||||||| || | ||||| || || Sbjct 368983 GTAAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGG 369042 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| ||||||||||| || ||| |||||||| || |||||||| ||| | Sbjct 369043 CCAATGGGCTGCAAGAGGTTCAAATTATTGCTACCCACAAAATTCTGAGCCAAACTGATA 369102 Query 117425 ATCGT 117429 || || Sbjct 369103 ATGGT 369107 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | || || | |||||||||||| ||||| || |||||||| Sbjct 368983 GTAAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGG 369042 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| | || ||| ||||| ||||||||||||||| | | | Sbjct 369043 CCAATGGGCTGCAAGAGGTTCAAATTATTGCTACCCACAAAATTCTGAGCCAAACTGATA 369102 Query 152149 ATCGT 152153 || || Sbjct 369103 ATGGT 369107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546155933164800