Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq7138 123 3e-23 seq131350 122 1e-22 >seq7138 Length=5562 Score = 123 bits (136), Expect = 3e-23 Identities = 564/884 (64%), Gaps = 19/884 (2%) Strand=Plus/Plus Query 13670 GCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729 |||||| || ||||||| || || || ||||| || || || ||| | || ||||| Sbjct 1693 GCCCCTTAGTGAAGAAGAGGCGGATTTCCCAATCGCATATTCTATAGTGGTTCATCACAA 1752 Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789 || || ||| | || | ||||||||||||||||| || ||||| |||||||| | Sbjct 1753 AATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCAT 1812 Query 13790 CCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCG-TCTCGGCCATCGCCAGGT 13848 || |||||| || || | || | || | | ||| | ||| ||| || | Sbjct 1813 TCATGTGGACAGAAAATCAGAAGA-GTCTTTTTTAGCTGCGGTGACGGGCATTGCATCCT 1871 Query 13849 GCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC 13908 | ||| ||| || ||||| || | || | ||||| || | || ||||||| Sbjct 1872 GTTTCAATAATGTCTTTGTGGCCAGCCAGTTGGAGAGTGTGGTTTATGCTTCATGGAGTC 1931 Query 13909 GCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGT 13968 | || ||||| ||||||| ||||||| |||||| || | || |||| || Sbjct 1932 GGGTTCAGGCTGACCTCAACTGCATGAAGGACCTCTACAAGATGAGTGCAAACTGGAAGT 1991 Query 13969 ACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGG 14028 || || |||| || || || ||||| |||||| |||| ||||||||||| |||||| || Sbjct 1992 ACTTGATCAATCTTTGTGGTATGGATTTCCCGATCAAAACCAACCTGGAAATCGTGAGGA 2051 Query 14029 CGCT---GAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCA-C 14084 || | | | |||| | | ||| |||||||| ||| |||||| | | Sbjct 2052 AACTTGAGTTGTTCATGGGTG---AAAACAACCTGGAGACTGAGAAGATGCCCTCCAATA 2108 Query 14085 AAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGG-CGGCGTGGTGGTCAACAC 14143 ||| | | | | || || || | || | | ||| | || || | ||||| Sbjct 2109 AAGAAGAAAGG---TGGAAAAAGTCATGCTGTTGTTAACGGACAGC----TGATAAACAC 2161 Query 14144 CGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTT 14203 || | ||| | | ||| || ||||| | ||| | || |||| | || ||||| Sbjct 2162 AGGGTTGGTCAAAGAGCGGCCTCCACTCAGATTTCCCCTTTTCTCGGGCAGTGCCTACTT 2221 Query 14204 TGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCAT 14263 || || || |||| | |||| || || || || | || | | |||| Sbjct 2222 TGTGGCCAGTAGGGAATATGTGGGCTATGTGCTAGAGAATGAAGACATCCAGAAGTTCAT 2281 Query 14264 GCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAAT 14323 | | ||| | | ||||| ||||||||||| ||| |||| ||||||||| | || || || Sbjct 2282 GGAGTGGGCCCAAGACACATACAGCCCCGATGAGTACCTCTGGGCCACCATCCAAAGGAT 2341 Query 14324 GTACGGGACGCCCGGGGGGA-TCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGG 14382 | | | ||| || | || || || ||||| ||| || |||||| | Sbjct 2342 -CCCCGAAGTCCCTGGCTCACTCTCCTCAAACCATAAGTATGACTTGTCTGACATGAATG 2400 Query 14383 CCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGT 14442 | | ||||| ||||||||||| |||| ||| || ||| | || || || | | Sbjct 2401 CTGTCGCTAGGTTTGTCAAGTGGCAGTACTTCGAAGGTGATGTTTCCAAGGGCGCGCCCT 2460 Query 14443 ACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGA 14502 ||||||| ||| || | ||||| | | | | ||| | |||||| |||||| ||| Sbjct 2461 ACCCGCCCTGCAGTGGGGTGCACGTGCGCTCTGTGTGCGTTTTCGGGGTTGGCGACTTGA 2520 Query 14503 AGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 | ||| || | | | ||| | || ||||| ||||| ||| Sbjct 2521 AATGGATGCTGCGTAAGCACCACTTTTTTGCCAATAAGTTTGAC 2564 >seq131350 Length=683 Score = 122 bits (134), Expect = 1e-22 Identities = 244/359 (68%), Gaps = 2/359 (1%) Strand=Plus/Minus Query 13670 GCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729 |||||| || ||||||| || || || ||||| || || || ||| | || ||||| Sbjct 436 GCCCCTTAGTGAAGAAGAGGCGGATTTCCCAATCGCATATTCTATAGTGGTTCATCACAA 377 Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789 || || ||| | || | ||||||||||||||||| || ||||| |||||||| | Sbjct 376 AATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCAT 317 Query 13790 CCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCG-TCTCGGCCATCGCCAGGT 13848 || |||||| || || | || | || | | ||| | ||| ||| || | Sbjct 316 TCATGTGGACAGAAAATCAGAAGA-GTCTTTTTTAGCTGCGGTGACGGGCATTGCATCCT 258 Query 13849 GCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC 13908 | ||| ||| || ||||| || | || | ||||| || | || ||||||| Sbjct 257 GTTTCAATAATGTCTTTGTGGCCAGCCAGTTGGAGAGTGTGGTTTATGCTTCATGGAGTC 198 Query 13909 GCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGT 13968 | || ||||| ||||||| ||||||| |||||| || | || |||| || Sbjct 197 GGGTTCAGGCTGACCTCAACTGCATGAAGGACCTCTACAAGATGAGTGCAAACTGGAAGT 138 Query 13969 ACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027 || || |||| || || || ||||| |||||| |||| ||||||||||| |||||| || Sbjct 137 ACTTGATCAATCTTTGTGGTATGGATTTCCCGATCAAAACCAACCTGGAAATCGTGAGG 79 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657463090421760