Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq15815 223 3e-53 seq5010 129 5e-25 seq10112 122 7e-23 seq1271 89.7 4e-13 seq31974 82.4 6e-11 >seq15815 Length=3425397 Score = 223 bits (246), Expect = 3e-53 Identities = 431/625 (69%), Gaps = 17/625 (3%) Strand=Plus/Plus Query 29840 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAG 29899 ||||| ||||| || || | || ||||||| | ||||| || || | || || |||||| Sbjct 2366396 GGAAAAGGTCTTGGTTCTCGCTGGAGCTGAATTTTCAGTGGCTCAATGTGATTCAGGTAA 2366455 Query 29900 ACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29959 || | || ||||||| | | ||||| || || | | || | |||| ||| || Sbjct 2366456 ACATATGCATCTCCCAAAATA-GTACAAAATCACCTGACTTCAGGTCTGTGATGTGTGCG 2366514 Query 29960 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 30019 |||||||| | || || | |||||||||||||| ||||| || || || ||| | | Sbjct 2366515 ATCATGTAGCTTAGCGGACA-TAGCTGGCGATGTTGAAGGGCACACCCAGGCCCGTACCT 2366573 Query 30020 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATG 30079 || ||||||||||| || || || || ||||| || | ||| || |||| || | | Sbjct 2366574 CCTGACCTCTGGTAAAGTTGGCAGGACAGCTCCCCATTCACCACATAGAACTAGCAGAGG 2366633 Query 30080 GCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACG 30136 | || || | || || ||||| |||| ||| ||||| ||||||||||| ||| Sbjct 2366634 ACTTGACAAGAAGCCAGCGCCATCAGAGG---AAGATCTTTTGGGTTCCAGGCACAC--- 2366687 Query 30137 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30196 ||||| | ||| || | |||| | ||||| || | | || ||||||| || Sbjct 2366688 ATGATTCTTCTG---TCAGTGTTGGTTTTGATGGTATCAATAACTTTCTGCAGCTTGTCT 2366744 Query 30197 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAC 30256 | || || ||||| || | ||| || |||| |||||||| |||||| ||||| Sbjct 2366745 GCTCCTTGACCTGAGTAATCAGAATCCATATCTTTGTAGTCTGCTCCAAAATGCATCCAC 2366804 Query 30257 TGGAACCCGTACACCGGTCCCAGGTCTCC-CTCTTCCCTGTGCTCGAAGCCC-CTCTTGT 30314 ||||| || || || || | |||||| || ||| || ||| ||| ||| ||| Sbjct 2366805 TGGAAACCATAAACTGGACTCAGGTCCCCTTTCTGCCGAGTG-GAGAATCCCTAGGCTGT 2366863 Query 30315 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTT 30374 ||| |||||| | ||| || ||||| |||||||| || ||||| | || || |||| Sbjct 2366864 CCAGAAAGTCCCGGGATCCATTGGCATCCCAGATTTTCTCCCCCCTGGAGGACAGTTCTT 2366923 Query 30375 TGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGA 30434 | | |||||||| || | | ||||| |||| |||||||| || ||||||| || | Sbjct 2366924 TAGCATTTGTGGATCCCTTAATAAACCATAGCAACTCCTCCAAAACACCCTTCCAGAATA 2366983 Query 30435 CCCTCTTGGTCGTGAGGAGGGGAAA 30459 | | |||| ||||| || ||||| Sbjct 2366984 CTCGTTTGGCTGTGAGCAGAGGAAA 2367008 >seq5010 Length=4126613 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | |||||||||||||| ||||| Sbjct 1433164 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 1433223 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || ||||| || || ||||||||||| ||||| || || ||||| || | | Sbjct 1433224 ACACCAAGGCCCATATCTCCTGACCTCTGGTAAAGCTGGCAGGACAGCTCCCCATTCACC 1433283 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | ||| ||||| ||||| || ||||| || Sbjct 1433284 ACGTAGAACTGGCAGAGGGCATGGCAAGGAGGCAGTGCCATCAG 1433327 Score = 100 bits (110), Expect = 2e-16 Identities = 125/169 (74%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| ||||| || ||||||||||||||||| || || || || |||||||| Sbjct 1439398 CATATCTTTGTAGTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAGGTC 1439457 Query 30283 TCCCTCTTCCC-TGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 || || |||| ||| ||| ||| |||||| |||||||| ||| || ||||| | Sbjct 1439458 CCCTTCCTCCCGAGTG-GAGAATCCCAGGCTGTCCAGAAAGTCTCGGGATCCATTGGCAT 1439516 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||||||| || || ||| | || || ||||| | ||||| || || Sbjct 1439517 CCCAGATTTTCACTCCCCTGGAGGACAGTTCTTTAGCATTTGTAGATCC 1439565 >seq10112 Length=11852372 Score = 122 bits (134), Expect = 7e-23 Identities = 400/619 (65%), Gaps = 46/619 (7%) Strand=Plus/Plus Query 29840 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAG 29899 ||||| ||||| || || | || ||||||| | ||||| || | | | || |||||| Sbjct 4836216 GGAAAAGGTCTTGGTTCTCCCTGGAGCTGAATTTTCAGTGGCTAGATATAATTCAGGTAA 4836275 Query 29900 ACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29959 || | || ||||||| | || || || || || | | || || |||| ||| || Sbjct 4836276 ACACGTGCATCTCCCAAAGTATGTACGAAATCACCTGACTTCAGGCCTGTGATGTGTGCT 4836335 Query 29960 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 30019 |||||||| ||||| | | |||||| |||||| ||||| || || || ||||| || Sbjct 4836336 ATCATGTAGGTGAGTGGGGCATAGCTGCAGATGTTGAAGGGCACACCCAGGCCCATATCT 4836395 Query 30020 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATG 30079 || | || |||||| ||||| || ||| ||| Sbjct 4836396 CCTGCCCCCTGGTACAGCTGGCA---GAGG--------------GTA------------- 4836425 Query 30080 GCGTGGCACGGAGGAAGAGCCATGAGGCCCAAG-TCTTTGGGGTTCC-AGGCGCACACGA 30137 ||||| ||||| | |||| | ||| ||||| |||| || |||| |||| || Sbjct 4836426 ---TGGCAAGGAGGTGGCACCATCGG----AAGATCTTTTGGGTCCCTAGGCACACATGA 4836478 Query 30138 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 30197 |||| | ||||| || |||| | |||||| || | || ||||| || || | Sbjct 4836479 TGATTCTTCTGTCATC---GTTGGTTTTGATGATATCAATCATTTTCTGCAGATGGTCTA 4836535 Query 30198 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACT 30257 | || || ||||| |||| ||| || |||| ||||| || ||||||||||||| Sbjct 4836536 CTCCTTGACCTGAGTAATCTGAATCCATATCTTTGTAGTCTGCCCC-AAATGCCTCCACT 4836594 Query 30258 GGAACCCGTACACCGGTCCCAGGTCTCCCT-CTTCCCTGTGCTCGAAGCCCCTCTTGTCC 30316 |||| | || || | |||| ||| || | || || ||| ||| ||| | ||| Sbjct 4836595 GGAAATCATAAACGGTGCCCAAGTCCCCTTCCTGCCGAGTG-GAGAATCCCAGGCTTTCC 4836653 Query 30317 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTT- 30375 | ||||| ||| || ||| | |||||||| ||||| || | || | ||||| Sbjct 4836654 AGAAAGTTGGGGGAGCCATTGACATCCCAGATTTTTACTTCCCTAGGGGACTGTTCTTTA 4836713 Query 30376 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 30435 |||| || |||| | |||||||||| ||||| | || ||||||| || || Sbjct 4836714 CCAGTTGTGGGTCCCTTAAAAAAACCACAGCAACTCCTTTAAAACATCCTTCCAGAATAC 4836773 Query 30436 CCTCTTGGTCGTGAGGAGG 30454 | ||| | ||||| ||| Sbjct 4836774 TCATTTGATTGTGAGCAGG 4836792 >seq1271 Length=1277762 Score = 89.7 bits (98), Expect = 4e-13 Identities = 126/172 (73%), Gaps = 9/172 (5%) Strand=Plus/Minus Query 110448 ATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCC 110507 |||||| || || ||||||||||| || || |||||||| ||||||| ||||| || || Sbjct 107836 ATTCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACC 107777 Query 110508 TCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCAAAGTCTCGC 110567 | |||||||| || | ||||| | | |||| || | || || | | || Sbjct 107776 TTGTACTGAAGAGGTTGTGGTCATTCTTTGGAAGTACTTGACCTCGTTCCTGA-----GC 107722 Query 110568 AGGATGCCACGGCA-GATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACG 110617 |||| |||| |||| |||| | ||| || |||||||||||| ||||| |||| Sbjct 107721 AGGA-GCCAGGGCAGGATC-CTGTTCTTGCCGATGCCCATGTTCTGGGCACG 107672 >seq31974 Length=1445934 Score = 82.4 bits (90), Expect = 6e-11 Identities = 167/241 (69%), Gaps = 9/241 (4%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| | || || || || ||||| | ||||| || ||| | | ||| | Sbjct 1042959 ATGAGCTCCTGGTGGAGGTTCCTTGAGCTCTCCACTGAGAACAGTGTTAGTGCGGTCCTT 1042900 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | |||| |||||| || || || |||||||| | || || ||||| ||||||| || Sbjct 1042899 TAATGGTCAATTCTTCTCAGGAATAGAGAACCAGGATTTCCTGCCCATGATCACCAGATT 1042840 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 110558 ||| || ||| |||||||| || ||||| | | |||| || || ||| || Sbjct 1042839 CTGTTTACCTTCTACTGAAGAGGTTATGGTCATTCTTTGGAAGTACTTGAA--CTTGGCC 1042782 Query 110559 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGC-CCATG-TCT-GGACA 110615 | |||| || ||| ||||||||||| || || | ||||| ||||| ||| ||||| Sbjct 1042781 GTG-CTCGGGGG---CCAGGGCAGATCTCCATTCTTACTGATGCTCCATGTTCTGGGACA 1042726 Query 110616 C 110616 | Sbjct 1042725 C 1042725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405542973105792