Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq23020 104 1e-17 >seq23020 Length=748909 Score = 104 bits (114), Expect = 1e-17 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||| | || | || |||||| |||||| || ||||| || || || Sbjct 60973 GCCTCCCCTGAGACGGAGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 60914 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || ||||| |||||||| || | | ||| ||||| || || Sbjct 60913 CAGAGTGCGGCCATCTTCTAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGTGG 60854 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | || ||||| | ||||| Sbjct 60853 GATGCCCTCCTTGTCCTGGATC-TTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCA 60795 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 | |||| ||| || || || ||||| | || ||||| || |||||||| |||| Sbjct 60794 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGA 60741 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || || ||| |||||| || ||||| ||||| || || || || | ||||| || || Sbjct 61176 TGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGATAGAGTGCGGCCATCTTCCAGCTGC 61117 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | | ||| ||||| || || | ||||||||||| |||| || Sbjct 61116 TTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATC-TT 61058 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||| | || ||||| | |||||| |||| ||| || || || ||||| Sbjct 61057 GGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGT 60998 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 | || ||||| || ||||||||| Sbjct 60997 CAGGGTCTTCACGAAGATCTGCATG 60973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314135148173408