Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq15815 298 5e-76 seq5010 159 3e-34 seq10112 122 8e-23 >seq15815 Length=3425397 Score = 298 bits (330), Expect = 5e-76 Identities = 521/753 (69%), Gaps = 9/753 (1%) Strand=Plus/Plus Query 6499 GAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTT 6558 ||||| || || |||| || ||||| || ||||| || || |||| ||||| || Sbjct 2366389 GAGCTTTGGAAAAGGTCTTGGTTCTCGCTGGAGCTGAATTTTCAGTGGCTCAATGTGATT 2366448 Query 6559 CAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGAC 6618 |||||| | || ||||| ||||| || | || | || || | || | || Sbjct 2366449 CAGGTAAACATATGCATCTCCCAAAATA-GTACAAAATCACCTGACTTCAGGTCTGTGAT 2366507 Query 6619 ATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCC 6678 || ||||||||||| | ||| || | || || || |||||||| ||||| || | || Sbjct 2366508 GTGTGCGATCATGTAGCTTAGCGGA-CATAGCTGGCGATGTTGAAGGGCACACCCAGGCC 2366566 Query 6679 CATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTG 6738 | | |||| || | || || || ||||||||||||||||||||| | || ||||| | Sbjct 2366567 CGTACCTCCTGACCTCTGGTAAAGTTGGCAGGACAGCTCCCCATTCACCACATAGAACTA 2366626 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCA 6798 ||||||| || || | | |||||||||||||| ||||| || |||||||| || || Sbjct 2366627 GCAGAGGACTTGACAAGAAGCCAGCGCCATCAGAGGAAGATCTTTTGGGTTCCAGGCACA 2366686 Query 6799 CATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTG 6858 ||| ||| ||||||||| | ||| || | ||| || || || | |||||||| Sbjct 2366687 CAT---GATTCTTCTGTCA---GTGTTGGTTTTGATGGTATCAATAACTTTCTGCAGCTT 2366740 Query 6859 GTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCT 6918 ||| ||||| || || || || || | || | | || || || ||||| || | Sbjct 2366741 GTCTGCTCCTTGACCTGAGTAATCAGAATCCATATCTTTGTAGTCTGCTCCAAAATGCAT 2366800 Query 6919 CCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCC-GCT 6977 ||||||||| || || || || | || ||| || | || ||||| | ||| ||| | Sbjct 2366801 CCACTGGAAACCATAAACTGGACTCAGGTCCCCTTTCTGCCGAGTGGAGAATCCCTAGGC 2366860 Query 6978 TGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCT 7037 ||||||||||||| || || || | || |||||||| ||| |||||| ||| || || | Sbjct 2366861 TGTCCAGAAAGTCCCGGGATCCATTGGCATCCCAGATTTTCTCCCCCCTGGAGGACAGTT 2366920 Query 7038 CCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGT 7097 | || | || |||| ||| | | ||||| |||| |||||| | || ||||||||| Sbjct 2366921 CTTTAGCATTTGTGGATCCCTTAATAAACCATAGCAACTCCTCCAAAACACCCTTCCAGA 2366980 Query 7098 ACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCTGTGTGC 7157 | || ||||| | || ||||| |||||||| | | || |||| | ||||| ||| Sbjct 2366981 ATACTCGTTTGGCTGTGAGCAGAGGAAATTCATCTCTCGGGCTGTAGCACGCCTGCATGC 2367040 Query 7158 CGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTCCGGTAGCCCTCCCTGAGGA 7217 || ||| | |||| | || || || |||||| |||||| | |||| | |||| Sbjct 2367041 GGAGCACCAACAGGGCGCTGGTGCCAGTGCGGTCCTCCTTCCTGAAGCCTCAGCACAGGA 2367100 Query 7218 TCCGCGCCACCTGATACAGATACTGCCACTCCC 7250 | || |||||| ||| ||||| ||||| Sbjct 2367101 TGTGCTGCACCTGGCCCAGGCACTGCAGCTCCC 2367133 Score = 298 bits (330), Expect = 5e-76 Identities = 521/753 (69%), Gaps = 9/753 (1%) Strand=Plus/Minus Query 34095 GGGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGGAAGGGGG 34154 ||||| ||||| ||| |||||| || ||||| | |||| | |||||| || Sbjct 2367133 GGGAGCTGCAGTGCCTGGGCCAGGTGCAGCACATCCTGTGCTGAGGCTTCAGGAAGGAGG 2367074 Query 34155 ACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGGG 34214 |||| || || || | |||| | ||| || ||| ||||| | |||| || | | Sbjct 2367073 ACCGCACTGGCACCAGCGCCCTGTTGGTGCTCCGCATGCAGGCGTGCTACAGCCCGAGAG 2367014 Query 34215 GCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGC 34274 |||||||| ||||| || | ||||| || | ||||||||| || | |||||| ||| Sbjct 2367013 ATGAATTTCCTCTGCTCACAGCCAAACGAGTATTCTGGAAGGGTGTTTTGGAGGAGTTGC 2366954 Query 34275 TGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCT 34334 | ||||| | | ||| |||| || | || || || || ||| |||||| ||| |||| Sbjct 2366953 TATGGTTTATTAAGGGATCCACAAATGCTAAAGAACTGTCCTCCAGGGGGGAGAAAATCT 2366894 Query 34335 GGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGC-GGGGGTTCCCATCTCGGGAGGAG 34393 |||| || | || || || ||||||||||||| | ||| ||| | ||||| || | Sbjct 2366893 GGGATGCCAATGGATCCCGGGACTTTCTGGACAGCCTAGGGATTCTCCACTCGGCAGAAA 2366834 Query 34394 GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGG 34453 || ||| || | || || || || |||||||||| || ||||| || || || | Sbjct 2366833 GGGGACCTGAGTCCAGTTTATGGTTTCCAGTGGATGCATTTTGGAGCAGACTACAAAGAT 2366774 Query 34454 AGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTG 34513 | || | || || || || || ||||| ||| |||||||| | || || || ||| | Sbjct 2366773 ATGGATTCTGATTACTCAGGTCAAGGAGCAGACAAGCTGCAGAAAGTTATTGATACCATC 2366714 Query 34514 AAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCT 34573 || ||| | ||||||||| ||| ||||| || |||||||| || ||||| ||| Sbjct 2366713 AAAACCAACAC---TGACAGAAGAATC---ATGTGTGCCTGGAACCCAAAAGATCTTCCT 2366660 Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTG 34633 ||||||||||| | | || || ||||||| | ||||| || | ||||||||||||| Sbjct 2366659 CTGATGGCGCTGGCTTCTTGTCAAGTCCTCTGCTAGTTCTATGTGGTGAATGGGGAGCTG 2366600 Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693 |||||||| || || || | || |||| | ||| | || ||||| |||||||| || Sbjct 2366599 TCCTGCCAACTTTACCAGAGGTCAGGAGGTACGGGCCTGGGTGTGCCCTTCAACATCGCC 2366540 Query 34694 AGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTG 34753 || || | || ||| | ||||||||||| || || | || | || || | Sbjct 2366539 AGCTATG-TCCGCTAAGCTACATGATCGCACACATCACAGACCTGAAGTCAGGTGATTTT 2366481 Query 34754 GTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAG 34813 || | || ||||| ||||| || | |||||||| ||||| |||| || || ||| Sbjct 2366480 GTAC-TATTTTGGGAGATGCATATGTTTACCTGAATCACATTGAGCCACTGAAAATTCAG 2366422 Query 34814 CTGCAACGAGAGCCCCGACCGTTCCCCCAGCTC 34846 || || ||||| || |||| || || ||||| Sbjct 2366421 CTCCAGCGAGAACCAAGACCTTTTCCAAAGCTC 2366389 >seq5010 Length=4126613 Score = 159 bits (176), Expect = 3e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| || || || || |||||||| ||||| || | ||| Sbjct 1433176 TGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCAAGGCCC 1433235 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || ||||| || | || || |||||||||||||||||||||||| | |||||||| ||| Sbjct 1433236 ATATCTCCTGACCTCTGGTAAAGCTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGG 1433295 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||| || || || ||||||||||| ||||| Sbjct 1433296 CAGAGGGCATGGCAAGGAGGCAGTGCCATCAGAGGAAGATC 1433336 Score = 159 bits (176), Expect = 3e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||||||||| || || || ||||| |||||||||| |||||||| | |||| Sbjct 1433336 GATCTTCCTCTGATGGCACTGCCTCCTTGCCATGCCCTCTGCCAGTTCTACGTGGTGAAT 1433277 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||||||||||||||| || || | || ||||| ||||| | || ||||| ||| Sbjct 1433276 GGGGAGCTGTCCTGCCAGCTTTACCAGAGGTCAGGAGATATGGGCCTTGGTGTGCCCTTC 1433217 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || || || |||||||| ||||||||||| || Sbjct 1433216 AACATCGCCAGCTATGCCCTGCTCACCTACATGATCGCACA 1433176 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || || || |||| ||| || |||||| Sbjct 1439408 TAGTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAGGTCCCCTTCCTCC 1439467 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 |||| | ||| ||| | |||||||||||||||| || || | || |||||||| ||| Sbjct 1439468 CGAGTGGAGAATCCCAGGCTGTCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTC 1439527 Query 7019 ACCCCCCGGGACGAGAGCTCCTT 7041 || |||| ||| || || || || Sbjct 1439528 ACTCCCCTGGAGGACAGTTCTTT 1439550 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34304 AAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTG 34363 || || || || ||| |||| ||||| |||||||| || | || || |||||||||||| Sbjct 1439550 AAAGAACTGTCCTCCAGGGGAGTGAAAATCTGGGATGCCAATGGATCCCGAGACTTTCTG 1439491 Query 34364 GACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAG 34423 |||| | ||| ||| | |||||||||| || ||| |||| || || || || |||||| Sbjct 1439490 GACAGCCTGGGATTCTCCACTCGGGAGGAAGGGGACCTGGGTCCAGTTTATGGCTTCCAG 1439431 Query 34424 TGGAGACACTTTGGGGCGGAGTA 34446 ||||| || |||||||| || || Sbjct 1439430 TGGAGGCATTTTGGGGCAGACTA 1439408 >seq10112 Length=11852372 Score = 122 bits (134), Expect = 8e-23 Identities = 261/385 (68%), Gaps = 9/385 (2%) Strand=Plus/Plus Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCC-ACGC 6795 ||||||||||| ||||| || || || ||||| || ||||| || |||| || | || Sbjct 4836414 TGGCAGAGGGTATGGCAAGGAGGTGGCACCATCGGA---AGATCTTTTGGGTCCCTAGGC 4836470 Query 6796 GCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAG 6855 ||||| | ||| ||||||||||| ||| || | | | || |||| | |||||| Sbjct 4836471 ACACATGATGATTCTTCTGTCATC---GTTGGTTTTGATGATATCAATCATTTTCTGCAG 4836527 Query 6856 CTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTG 6915 ||||| |||| || || || || || | || | | || || |||||||| || Sbjct 4836528 ATGGTCTACTCCTTGACCTGAGTAATCTGAATCCATATCTTTGTAGTCTGCCCCAAA-TG 4836586 Query 6916 TCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCG 6975 ||||||||||| | || || | ||||||||| || |||| ||||| | ||| ||| | Sbjct 4836587 CCTCCACTGGAAATCATAAACGGTGCCCAAGTCCCCTTCCTGCCGAGTGGAGAATCCCAG 4836646 Query 6976 CTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAG 7035 | |||||||||| | || || | | |||||||| || || ||| | || | Sbjct 4836647 GCTTTCCAGAAAGTTGGGGGAGCCATTGACATCCCAGATTTTTACTTCCCTAGGGGACTG 4836706 Query 7036 CTCCTTGGTGTTCGTGGCCCCCCT-CACGAACCACAGCAGCTCCTCGACCACGCCCTTCC 7094 || || | |||| ||| | | |||||||||| ||||| | || |||||| Sbjct 4836707 TTCTTTACCAGTTGTGGGTCCCTTAAAAAAACCACAGCAACTCCTTTAAAACATCCTTCC 4836766 Query 7095 AGTACACACGTTTCGTCGTCAGCAG 7119 || | || | ||| | || ||||| Sbjct 4836767 AGAATACTCATTTGATTGTGAGCAG 4836791 Score = 122 bits (134), Expect = 8e-23 Identities = 261/385 (68%), Gaps = 9/385 (2%) Strand=Plus/Minus Query 34226 CTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTG 34285 ||||| || | ||| | || | |||||||| || | ||||| |||||||||| | Sbjct 4836791 CTGCTCACAATCAAATGAGTATTCTGGAAGGATGTTTTAAAGGAGTTGCTGTGGTTTTTT 4836732 Query 34286 -AGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCA 34344 | ||| |||| | || || | || | ||| || || |||||||| | | Sbjct 4836731 TAAGGGACCCACAACTGGTAAAGAACAGTCCCCTAGGGAAGTAAAAATCTGGGATGTCAA 4836672 Query 34345 CGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGG 34404 || || | |||||||||| | | ||| ||| | ||||| |||| || |||||||| Sbjct 4836671 TGGCTCCCCCAACTTTCTGGAAAGCCTGGGATTCTCCACTCGGCAGGAAGGGGACTTGGG 4836612 Query 34405 CCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGA 34464 | | || || | ||||||||||| || |||||||| || || | | || | || Sbjct 4836611 CACCGTTTATGATTTCCAGTGGAGGCA-TTTGGGGCAGACTACAAAGATATGGATTCAGA 4836553 Query 34465 CTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCC 34524 || || || || |||| ||||| |||||| | |||| || | | | || ||| Sbjct 4836552 TTACTCAGGTCAAGGAGTAGACCATCTGCAGAAAATGATTGATATCATCAAAACCAAC-- 4836495 Query 34525 TGATGACAGAAGGATCGTGATGTGCGCGT-GGAACCCGAAGGATCTCCCTCTGATGGCGC 34583 ||||||||||| ||| | ||||| || | || |||| || ||||| || ||||| || Sbjct 4836494 -GATGACAGAAGAATCATCATGTGTGCCTAGGGACCCAAAAGATCT---TCCGATGGTGC 4836439 Query 34584 TCCCCCCGTGCCACACCCTCTGCCA 34608 || || ||||| ||||||||||| Sbjct 4836438 CACCTCCTTGCCATACCCTCTGCCA 4836414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447394026078720