Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq22731 187 2e-42 seq19728 140 3e-28 seq17667 123 2e-23 seq15815 116 3e-21 seq1394 109 5e-19 seq134870 89.7 4e-13 seq7731 89.7 4e-13 seq10112 82.4 6e-11 >seq22731 Length=1787800 Score = 187 bits (206), Expect = 2e-42 Identities = 195/256 (76%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1270 aaaCGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAA 1329 |||| | || |||| | | |||||||||||||| ||| || || ||| ||||||| Sbjct 1688420 AAACTTCCCAGGAAGCTTTGATTGTAACATGGCAGAAAAAGAAGGCTGTAAGTCCAGAAA 1688361 Query 1330 ACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAA 1389 |||||| ||||| || || |||| |||||||| || ||||| || || || || | Sbjct 1688360 ACATGGTCACTTACAGCAAGAACCATGGGGTTGTGGTCCAGCCTGCCTATAAGGACAGGG 1688301 Query 1390 TGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGG 1449 | ||||| || ||||| ||||| | ||| |||| || |||||||||||||||||| ||| Sbjct 1688300 TAAACATCACCGAGCTGGGACTCCGGAACTCAACCATCACCTTCTGGAACACAACAGTGG 1688241 Query 1450 ATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAA 1509 ||||||| || || |||| |||| | || || | ||||| ||||||||||| ||||||| Sbjct 1688240 ATGATGAGGGCTGTTACATGTGTCTCTTCAATATCTTTGGTTCTGGGAAGATCTCAGGAA 1688181 Query 1510 TAGGGTGTCTAACCCT 1525 || || || ||||| Sbjct 1688180 CAGCCTGCCTCACCCT 1688165 >seq19728 Length=1556944 Score = 140 bits (154), Expect = 3e-28 Identities = 290/423 (69%), Gaps = 9/423 (2%) Strand=Plus/Minus Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA-- 2320 ||||||||| | || |||||||| || || || ||||| || |||| | | ||| | Sbjct 1391111 AAACAGAATCTAGTGATTATGGGTAGGAAAACCTGGTTCTCCATTCC--TGAGAAGAATC 1391054 Query 2321 GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTG 2380 | || || || | ||||| || || ||||||||||| | || || || || |||| | Sbjct 1391053 GACCATTAAAGGATAGAATTAAATTG-TTCTCAGTAGAGAACTCAAGGAACCTCCACCAG 1390995 Query 2381 GGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAAT 2440 | ||||| ||| |||| ||||| | ||| | ||| | || |||| | |||||||| Sbjct 1390994 GAGCTCATTTTCTTGCCCAAAGTCTCGATGATGCTTTAAAACTTATTGAACAACCAGAAT 1390935 Query 2441 TAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCA 2500 || | | | || || | | |||||||| | || || || ||||| ||| |||| ||| Sbjct 1390934 TAGCAAATAAAGTAGACATGGTTTGGATAGTAGGAGGCAGTTCTGT-TATAAGGA-AGCC 1390877 Query 2501 TTACAAGATCTTG-CAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGT 2559 | | | | | | | | | || ||| | |||| ||| | || |||||||| || Sbjct 1390876 ATGAATCAGCCAGACCATCTTAAACTATTTGTGACAAAGATCATACAGGAATTTGAAAGT 1390817 Query 2560 GATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGT 2619 || || | || ||||||||| || | |||||| || | || | |||| |||||| Sbjct 1390816 GACACTTTTTTTCCAGAAATTGATTTGGACAAATATAAGCTTCTCCCAGAATACCCAGGT 1390757 Query 2620 GTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaa 2679 |||| |||| || ||||| ||||| | || | || |||||||| ||||| |||| Sbjct 1390756 GTTCTTTCTGAGGTCCAAGAGGAAAA-AGCATCAAGTATAAATTTGAAGTATATAAAAAG 1390698 Query 2680 aaa 2682 ||| Sbjct 1390697 AAA 1390695 >seq17667 Length=6812278 Score = 123 bits (136), Expect = 2e-23 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 3233 ACGTTTCTTCAAGTTGTTG-ATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGT 3291 ||| ||| ||| | || || | ||||||||| | |||||||| ||||||||| | ||||| Sbjct 2606372 ACGCTTCGTCACGGTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGT 2606313 Query 3292 TGCTTTCTTTGAGTTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTC 3351 || ||||||||||| ||||| || ||||||||||| |||||||| || | || | | Sbjct 2606312 GGCCTTCTTTGAGTTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACAGGGAGATGTCACC 2606253 Query 3352 CCTCGTTGACAACATTGCCGCGTGGATGACAGACCAGCTG 3391 || || |||||||| ||| |||||||| ||| | ||| Sbjct 2606252 GCTGGTGGACAACATCGCCCTCTGGATGACCGACTACCTG 2606213 >seq15815 Length=3425397 Score = 116 bits (128), Expect = 3e-21 Identities = 407/622 (65%), Gaps = 39/622 (6%) Strand=Plus/Plus Query 118455 GAGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATG 118514 ||| || | ||||||||||||||||||||||| || |||| ||||| || | || | Sbjct 2366419 GAGCTGAATTTTCAGTGGCTCAATGTGATTCAGGTAAACATATGCATCTCCCAAAATA-G 2366477 Query 118515 TATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTA 118574 || || ||||| | | || |||| | ||| || |||||||| | | | || || Sbjct 2366478 TACAAAATCACCTGACTTCAGGTCTGTGATGTGTGCGATCATGTAGCTTAGCGGAC-ATA 2366536 Query 118575 GCTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCA 118634 |||||| | || || || |||||||| ||| | || |||| |||||||| | |||||| Sbjct 2366537 GCTGGCGATGTTGAAGGGCACACCCAGGCCCGTACCTCCTGACCTCTGGTAAAGTTGGCA 2366596 Query 118635 AGAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 || |||||||| || | ||||| |||| | | || ||||| | || ||| |||| Sbjct 2366597 GGACAGCTCCCCATTCACCACATAGAACTAGCAGAGGACTTGACAAGAAGCCAGCGCCAT 2366656 Query 118695 ----GGAA-CTCAGTTGGGCAGGATTCCAGGCTGTTAAAACATG--CCTTCTGCTA--TA 118745 |||| || ||||| |||||||| | ||||| |||||| | Sbjct 2366657 CAGAGGAAGATCTTTTGGG-----TTCCAGGC-----ACACATGATTCTTCTGTCAGTGT 2366706 Query 118746 TGGTTCTACCTGTATACCCTCAATTAAATTCTGAATCTGATCCACACCCTTTCCAGTATA 118805 ||||| | ||| ||||| | ||||| | || || | || | || | || Sbjct 2366707 TGGTTTTGATGGTA-----TCAATAACTTTCTGCAGCTTGTCTGCTCCTTGACCTGAGTA 2366761 Query 118806 CTGAGACTCGCAT-CCTTTATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAG 118864 | ||| || ||| |||| || ||||| |||||| |||| || ||||||||||| | Sbjct 2366762 ATCAGAATC-CATATCTTTGTAGTCTGCTCCAAAATGCATCCACTGGAAACCATAAACTG 2366820 Query 118865 GCCCCAGATCTCC---CTG--GGACCTAAAATCTAAACCTACTTTTCTCTGAAATTCTTT 118919 | | ||| || || ||| | | |||| |||| | | |||| || Sbjct 2366821 GACTCAGGTCCCCTTTCTGCCGAGTGGAGAATC----CCTAGGCTGTCCAGAAAGTCCCG 2366876 Query 118920 TGACCCATTAGCATTCCAAATAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGA 118979 || ||||| |||| ||| || | || | | ||| || |||| ||||| || Sbjct 2366877 GGATCCATTGGCATCCCAGATTTTCTCCCCCCTGGAGGACAGTTCTTTAGCATTTGTGGA 2366936 Query 118980 ACCACTTAA-AAACCAAAGAAGCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTG 119038 || ||||| |||||| || | |||||| | ||| || |||| || ||| ||| | || Sbjct 2366937 TCC-CTTAATAAACCATAGCAACTCCTCCAAAACACCCTTCCAGAATACTCGTTTGGCTG 2366995 Query 119039 TAAACAGTGGAAACTGACCTCT 119060 | | ||| ||||| | | |||| Sbjct 2366996 TGAGCAGAGGAAATTCATCTCT 2367017 >seq1394 Length=20397 Score = 109 bits (120), Expect = 5e-19 Identities = 354/542 (65%), Gaps = 12/542 (2%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| |||| || || || | || ||||||||||| || || || | || || Sbjct 17416 CTAAACTGCATTGTCGCCGTGTCCCAGAACATGGGCATTGGCAAGAATGGGGACCTACCC 17357 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATG---ACATCTTCTTCCACT 2256 ||| | || || | ||| | || || | || |||| |||| ||| | ||||| Sbjct 17356 TGGACCCCACTCAGAAACAAGTTCAAGTACTTCCAAAGAATGACCACAACCTCTTCAGTA 17297 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || || ||||| || || | ||| || |||| ||| Sbjct 17296 GAAGGTAAACAGAATCTCGTGATCATGGGCAGGAAAGCTGCGTTCTCCATTCCTGAGAAA 17237 Query 2317 AGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCA 2376 | | ||| || || |||||| ||| | ||||||||| || | || | || || ||| Sbjct 17236 AACCAGCCATTAAAGGACAGAACTAATATTGTTCTCAGTGGAGAGCTCAGGGAACCTCCA 17177 Query 2377 CGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCA 2436 || ||||| ||| |||| ||| || | ||| | ||| | || ||| | |||| Sbjct 17176 TCAGGAGCTCA-TTTCTTGCCAAACGTCTGGATGATGCTTTAAAACATATTGAACAACCA 17118 Query 2437 GAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAG 2496 |||||| | | | || || | ||| |||| | || || || |||| | | || || Sbjct 17117 GAATTAGCAAATAAAGTAGACGTGGTTTAGATAGTCGGAGGCAGTTCTGCTTGTAAGAAG 17058 Query 2497 AGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAA 2556 ||| | | | || | | | || | | | | || || ||||| ||||| || Sbjct 17057 -TCATGAATCGGCCAGGCCATCTTAAACTATCTGTGAGGAGAATCATGCAAGAATTTAAA 16999 Query 2557 TGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCA 2616 |||| || | || ||||||||| | | | |||||| || | || | |||| | || Sbjct 16998 AGTGACACTT--TTTCCAGAAATTGACTTGAACAAATATAAGCTTCTCCCAGAATGTTCA 16941 Query 2617 GGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaa 2676 ||||||| ||| | ||||||||||| || || | ||| ||||| || ||| | ||| Sbjct 16940 GGTGTTCTTTCT---CTCCAAGAAGAAAA-GGCATCAAATATAAATTCGAAATACA-GAA 16886 Query 2677 aa 2678 || Sbjct 16885 AA 16884 >seq134870 Length=760 Score = 89.7 bits (98), Expect = 4e-13 Identities = 318/493 (65%), Gaps = 7/493 (1%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| |||| || || || | || ||||||||||| || || || | || || Sbjct 272 CTAAACTGCATTGTCGCCGTGTCCCAGAACATGGGCATTGGCAAGAATGGGGACCTACCC 331 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATG---ACATCTTCTTCCACT 2256 ||| | || || | ||| | || || | || |||| |||| ||| | ||||| Sbjct 332 TGGACCCCACTCAGAAACAAGTTCAAGTACTTCCAAAGAATGACCACAACCTCTTCAGTA 391 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || || ||||| || || | ||| || |||| ||| Sbjct 392 GAAGGTAAACAGAATCTCGTGATCATGGGCAGGAAAGCTGCGTTCTCCATTCCTGAGAAA 451 Query 2317 AGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCA 2376 | | ||| || || |||||| ||| | ||||||||| || | || | || || ||| Sbjct 452 AACCAGCCATTAAAGGACAGAACTAATATTGTTCTCAGTGGAGAGCTCAGGGAACCTCCA 511 Query 2377 CGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCA 2436 || ||||| ||| |||| ||| || | ||| | ||| | || ||| | |||| Sbjct 512 TCAGGAGCTCA-TTTCTTGCCAAACGTCTGGATGATGCTTTAAAACATATTGAACAACCA 570 Query 2437 GAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAG 2496 |||||| | | | || || | ||| |||| | || || || |||| | | || || Sbjct 571 GAATTAGCAAATAAAGTAGACGTGGTTTAGATAGTCGGAGGCAGTTCTGCTTGTAAGAAG 630 Query 2497 AGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAA 2556 ||| | | | || | | | || | | | | || || ||||| ||||| || Sbjct 631 -TCATGAATCGGCCAGGCCATCTTAAACTATCTGTGAGGAGAATCATGCAAGAATTTAAA 689 Query 2557 TGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCA 2616 |||| || | || ||||||||| | | | |||||| || | || | |||| || Sbjct 690 AGTGACACTT--TTTCCAGAAATTGACTTGAACAAATATAAGCTTCTCCCAGAATGCTCA 747 Query 2617 GGTGTTCCCTCTG 2629 ||||||| |||| Sbjct 748 GGTGTTCTTTCTG 760 >seq7731 Length=929111 Score = 89.7 bits (98), Expect = 4e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 3252 ATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAGTTTGGTG 3311 |||| |||||||||||||||||||||||||| |||||||| || || || ||||| | Sbjct 606051 ATGAACTCTTCCGAGATGGGGTAAACTGGGGTCGCATTGTGGCCTTTTTCTCCTTTGGCG 606110 Query 3312 GTGTTATGTGTGTGGAAAGCGT 3333 ||| |||||||||||||||| Sbjct 606111 GTGCACTGTGTGTGGAAAGCGT 606132 >seq10112 Length=11852372 Score = 82.4 bits (90), Expect = 6e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 118455 GAGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATG 118514 ||| || | ||||||||||| || | ||||| || ||| | ||||| || | ||||| Sbjct 4836239 GAGCTGAATTTTCAGTGGCTAGATATAATTCAGGTAAACACGTGCATCTCCCAAAGTATG 4836298 Query 118515 TATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTA 118574 || ||| ||||| | | || ||||| | ||| || |||||||| || | || Sbjct 4836299 TACGAAATCACCTGACTTCAGGCCTGTGATGTGTGCTATCATGTAGGTGAGTGGGGCATA 4836358 Query 118575 GCTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCA 118634 |||| | || || || |||||||| ||||| ||| ||| | |||||||| ||||| Sbjct 4836359 GCTGCAGATGTTGAAGGGCACACCCAGGCCCATATCTCCTGCCCCCTGGTACAGCTGGCA 4836418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413693948654464