Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq16386 96.9 3e-15 seq23020 89.7 4e-13 >seq16386 Length=4700455 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || | ||| | ||||| || || ||| ||| || || || || || |||| Sbjct 632482 CCACCCCTGAGGCGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 632423 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || || || ||||| ||||| || || ||||||||||| | | Sbjct 632422 AGGGTGCGGCCGTCTTCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGG 632363 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || |||||||||| ||| || |||| || | | || || || | |||||| Sbjct 632362 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 632303 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| | || || ||||| || || || ||||| |||||| Sbjct 632302 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 632255 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || | ||| | ||||| | || ||| ||| || || || | || |||| Sbjct 631570 CCACCCCTGAGGCGGATCACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGAC 631511 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || || || ||||| ||||| || || ||||||||||| | | Sbjct 631510 AGGGTGCGGCCGTCTTCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGG 631451 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || |||||||||| ||| || |||| || | | ||||| || | |||||| Sbjct 631450 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACC 631391 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| | || || ||||| || || || ||||| |||||| Sbjct 631390 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 631343 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || | ||| | ||||| | || ||| ||| || || || | || |||| Sbjct 631798 CCACCCCTGAGGCGGATCACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGAC 631739 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || || || ||||| ||||| || || ||||||||||| | | Sbjct 631738 AGGGTGCGGCCGTCTTCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGG 631679 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || |||||||||| ||| || |||| || | | ||||| || | |||||| Sbjct 631678 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACC 631619 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| | || || ||||| || || || ||||| |||||| Sbjct 631618 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 631571 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || | ||| | ||||| | || ||| ||| || || || | || |||| Sbjct 632026 CCACCCCTGAGGCGGATCACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGAC 631967 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || || || ||||| ||||| || || ||||||||||| | | Sbjct 631966 AGGGTGCGGCCGTCTTCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGG 631907 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || |||||||||| ||| || |||| || | | ||||| || | |||||| Sbjct 631906 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACC 631847 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| | || || ||||| || || || ||||| |||||| Sbjct 631846 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 631799 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || | ||| | ||||| | || ||| ||| || || || | || |||| Sbjct 632254 CCACCCCTGAGGCGGATCACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGAC 632195 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || || || ||||| ||||| || || ||||||||||| | | Sbjct 632194 AGGGTGCGGCCGTCTTCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGG 632135 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || |||||||||| ||| || |||| || | | ||||| || | |||||| Sbjct 632134 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTATCACTGGGCTCCACC 632075 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| | || || ||||| || || || ||||| |||||| Sbjct 632074 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 632027 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || | ||| | ||||| | || ||| ||| || || || | || |||| Sbjct 631342 CCACCCCTGAGGCGGATCACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGAC 631283 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || || || ||||| ||||| || || | ||||||||||| | | Sbjct 631282 AGGGTGCGGCCGTCTTCCAGATGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGTGG 631223 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || |||||||||| ||| || |||| || | | || || || | |||||| Sbjct 631222 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 631163 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || ||||| || || || ||||| ||||| Sbjct 631162 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 631116 >seq23020 Length=748909 Score = 89.7 bits (98), Expect = 4e-13 Identities = 164/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | || | || || ||| ||| || || || || || || Sbjct 60976 CATGCCTCCCCTGAGACGGAGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 60917 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GG 39172 | || || || | || || ||||||||||| ||||| || || | ||||||||| || Sbjct 60916 AGACAGAGTGCGGCCATCTTCTAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGG 60857 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACT 39232 |||| | || ||| |||||| ||| || || | || | | || ||||| | || Sbjct 60856 TGGG-ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCT 60798 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 |||| |||| ||||| | || || ||||| || || || ||||| ||||| || || Sbjct 60797 CCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGAC 60740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428734287157088