Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq23020 86.0 4e-12 >seq23020 Length=748909 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||||| || || || || ||||| || || || || || Sbjct 60743 AAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 60802 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| || || | || || || Sbjct 60803 AGCGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGAC 60862 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || |||||||||||||| || ||||| | |||||| | || ||| Sbjct 60863 CAGCAGAGGCTGATCTTTGCCGGCAAACAGCTAGAAGATGGCCGCACTCTGTCTGACTAC 60922 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 60923 AACATCCAGAAGGAGTCCAC 60942 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 60974 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 61033 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || || || Sbjct 61034 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGACCAG 61093 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || |||||||| || |||||||| | |||||| || ||||||||| Sbjct 61094 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTATCTGATTACAAC 61153 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 61154 ATCCAGAAGGAGTCCAC 61170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337371177607808