Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq23020 140 8e-28 seq22538 140 8e-28 seq10252 140 8e-28 seq3476 127 5e-24 seq9583 122 2e-22 seq73829 113 1e-19 seq33511 102 2e-16 seq33506 87.8 4e-12 seq26011 86.0 1e-11 >seq23020 Length=748909 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| |||||||| || || |||| ||||| || | || ||| | |||||| Sbjct 60957 AGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCT 60898 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||||||| || || || ||||| || | || ||||| || || || || |||||||| Sbjct 60897 TCTAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCC 60838 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 60837 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 60778 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| || || | ||| | |||||||| Sbjct 60777 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 60743 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || || |||| |||||||| | | ||| | |||||| Sbjct 61185 AGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGATAGAGTGCGGCCATCT 61126 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || | || ||||| || || || || |||||||| Sbjct 61125 TCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCC 61066 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 61065 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 61006 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 61005 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 60974 >seq22538 Length=2998977 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| |||||||| || ||||| || ||||| || ||||| || | |||||| Sbjct 2995512 ACGAAGTCTCAACACAAGGTGAAGGGTGGACTCATTTTGAACGTTGTAGTCAGACAAAGT 2995453 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||| || | |||||| ||||| ||||| |||| ||| || || || ||||| || Sbjct 2995452 TCGTCCATACTCCAACTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCC 2995393 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| | |||||||| || ||| ||| | ||||| ||| ||| || || | Sbjct 2995392 TTCCTTATGCTGGATCTTGGCTTTTACATTTTCTGTAGTGTCCAAGGGTTCAACCTCAAG 2995333 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| | | | | || |||||||| | ||||| Sbjct 2995332 TGTGATGGTCTTCCTCATAAGGGTCTTTATGAAAATCTGCAT 2995291 >seq10252 Length=5655956 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||||||| |||| || || || || || ||||| |||||||| || | |||||| Sbjct 4525579 ACGAAGTCTCAGTGCAAGATGAAGGGTAGACTCCTTTTGAACATTGTAGTCAGACAAAGT 4525638 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || |||||||| ||||| ||||| || ||| || || || ||||| || Sbjct 4525639 TCGTCCATCCTCCAGCTGCTTACCAGCAAAGATCAGCTTTTGCTGATCAGGAGGAATTCC 4525698 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| || ||| ||| || |||| | | ||| || || | Sbjct 4525699 TTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAATGTCCAAAGGTTCAACCTCGAG 4525758 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| ||| | | || |||||||| | ||||| Sbjct 4525759 TGTGATGGTCTTTCCCATAAGGGTCTTTATGAAAATCTGCAT 4525800 >seq3476 Length=2418285 Score = 127 bits (140), Expect = 5e-24 Identities = 162/222 (73%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| ||||| || || ||||| || |||| || ||| | || | |||||| Sbjct 203985 ACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTT-GATGTTGCAGTCAGACAAAGT 203927 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||| || | |||||| ||||| |||| || | ||| || || ||| |||| || Sbjct 203926 TCACCCATCCTCCAACTGCTTACCAGCAAAGAGCAGCCTTTGCTGATCAGGCAGAATTCC 203867 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| | |||||||| || ||| ||| || |||| |||| ||| | | | Sbjct 203866 TTCCTTACCATGGATCTTGGCTTTTACATTTTCTATAGTGTACGAGGGTTCAATCTGGAG 203807 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | |||| ||||| ||||| | || |||||||| | ||||| Sbjct 203806 CATGATGGTCTTCCCCGTAAGGGTCTTTATGAAAATCTGCAT 203765 >seq9583 Length=785227 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || || |||| ||||| || | || | |||||| Sbjct 67162 AGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAACGTGGCCATCT 67103 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || || || || |||| ||| Sbjct 67102 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTCGTCC 67043 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||||||||| || ||||| || || ||||| ||| Sbjct 67042 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAAGGTGATGGTC 66983 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| || || | ||| | |||||||| Sbjct 66982 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 66948 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || || |||| ||||| || | || ||| |||||| Sbjct 67390 AGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGTGGCCATCT 67331 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || |||| ||||||||||| || | || ||||| || || || ||||||||||| Sbjct 67330 TCCAGTGGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCC 67271 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||| | || ||||||| || ||||| || | ||||| ||| Sbjct 67270 TGGATCTTGGCCTTCGCGTTCTCAATGGTGTTGCTGGGCTCCACTTCCAGGGTGATGGTC 67211 Query 225682 TTGCC 225686 ||||| Sbjct 67210 TTGCC 67206 >seq73829 Length=246 Score = 113 bits (124), Expect = 1e-19 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || || |||| ||||| || | || ||| |||||| Sbjct 244 AGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGTGGCCATCT 185 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||| |||| ||||||||||| || | || ||||| || || || ||||||||||| Sbjct 184 TCCAGCGGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCC 125 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||| | || ||||||| || ||||| || | ||||| ||| Sbjct 124 TGGATCTTGGCCTTCGCGTTCTCAATGGTGTTGCTGGGCTCCACTTCCAGGGTGATGGTC 65 Query 225682 TTGCC 225686 ||||| Sbjct 64 TTGCC 60 >seq33511 Length=8354299 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || |||| || ||||| ||||| |||| ||||| |||| | || | |||| Sbjct 8199648 CAGCACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTCCAGTCATC 8199589 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| || | || ||| || || || ||||| || | || ||||||||||| Sbjct 8199588 CTCCAGCTGCTTTCCGGTGAGGATCAGCCGCTGCTGGTCAGGAAGGATGCCTTCCTTGTC 8199529 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 | |||||| ||| ||| |||||||| || || ||||| || | ||||| || Sbjct 8199528 CTAGATCTTGGCCTTGACATTCTCGATGGTTTCACTGGGCTCCACCTCAAGAGTGATGGT 8199469 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 8199468 CTTGCCAGTCA 8199458 >seq33506 Length=6638000 Score = 87.8 bits (96), Expect = 4e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| || || || || ||| | || || ||| ||||| |||||||||||||||| Sbjct 3302539 CACTTCAGTATCTGGCTCCTTACTCTGGCTGCTCTATGGGAGAGTATTTTAGAGATAATG 3302598 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTT 5107 | ||||||||||| |||||||| || ||||| Sbjct 3302599 GCAAACATGCTTTGATCATCTATGACGATTT 3302629 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 4477 TGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGT 4536 || |||||||| || || || ||||| || || || |||||||| |||||||| || ||| Sbjct 3302964 TGTCCATCAGTGATGGAAATTACATTCGTTGGAATGTAAGCAGACACATCACCAGCCTGT 3302905 Query 4537 GTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 ||||| | || || ||||| || | || |||||||||||| Sbjct 3302904 GTTTCTATGACTGGCAAGGCAGTCAAAGAGCCACCACCAAAA 3302863 >seq26011 Length=983821 Score = 86.0 bits (94), Expect = 1e-11 Identities = 131/186 (70%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| | ||||| ||| | || ||||| || | || ||| | ||||| Sbjct 497180 CAGCACCAGGTGCATGGTGGACTCTCTA--GATGTTGTAGTCCGACAGAGTCCCGCCATC 497123 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || || ||||| ||| |||||| || | || ||||| || || | ||||||||||| Sbjct 497122 CTCCAGTTGCTTTCCAATGAAGATCAGGCTCTGCTGGTCTGGAGGGCTGCCTTCCTTGTC 497063 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 | ||||||| ||| ||| | ||||||||| || |||| || | ||||| || Sbjct 497062 TGGGATCTTGGCCTTGACATTCTTGATGGTGTCACTGGGCTCCATCTCGAGAGTGATGGT 497003 Query 225681 CTTGCC 225686 |||||| Sbjct 497002 CTTGCC 496997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190163274273344