Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq15815 201 9e-47 seq5010 149 5e-31 seq1271 84.2 2e-11 >seq15815 Length=3425397 Score = 201 bits (222), Expect = 9e-47 Identities = 436/650 (67%), Gaps = 13/650 (2%) Strand=Plus/Plus Query 29612 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAG 29671 ||||| ||||| || || | || ||||||||| |||| || || | ||| | ||||| Sbjct 2366396 GGAAAAGGTCTTGGTTCTCGCTGGAGCTGAATTTTCAGTGGCTCAATGTGATTCAGGTAA 2366455 Query 29672 ACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29731 || | |||||||||| | | ||||| || || | | || | |||| ||| || Sbjct 2366456 ACATATGCATCTCCCAAAATA-GTACAAAATCACCTGACTTCAGGTCTGTGATGTGTGCG 2366514 Query 29732 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCC 29791 |||||||| | || || | |||||||||||||| |||||||| || || ||| | | Sbjct 2366515 ATCATGTAGCTTAGCGGACA-TAGCTGGCGATGTTGAAGGGCACACCCAGGCCCGTACCT 2366573 Query 29792 CCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATG 29851 |||||||||||||| || ||||| || ||||| || | ||| || |||| || | | Sbjct 2366574 CCTGACCTCTGGTAAAGTTGGCAGGACAGCTCCCCATTCACCACATAGAACTAGCAGAGG 2366633 Query 29852 GCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATG 29911 | || || | || || ||||| ||| | ||||| ||||||||||||||| ||| Sbjct 2366634 ACTTGACAAGAAGCCAGCGCCATCAGAGGAAGATCTTTTGGGTTCCAGGCACAC---ATG 2366690 Query 29912 ATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACC 29971 || | ||| || | |||| | ||||| || | | || ||||||| || | Sbjct 2366691 ATTCTTCTG---TCAGTGTTGGTTTTGATGGTATCAATAACTTTCTGCAGCTTGTCTGCT 2366747 Query 29972 CCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGG 30031 || || ||||| || | | |||||| |||||||| Sbjct 2366748 CCTTGACCTGAGTAATCAGAATCCATATCTTTGTAGTCTGCTCCAAAATGCATCCACTGG 2366807 Query 30032 AACCCGTACACCGGTCCCAGGTCTCC-CTCTTCCCTGTGCTCGAAGCCC-CTCTTGTCCA 30089 || || || || || | |||||| || ||| || ||| ||| ||| |||||| Sbjct 2366808 AAACCATAAACTGGACTCAGGTCCCCTTTCTGCCGAGTG-GAGAATCCCTAGGCTGTCCA 2366866 Query 30090 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGG 30149 |||||| | ||| || ||||| |||||||| || ||||| | ||| || ||||| | Sbjct 2366867 GAAAGTCCCGGGATCCATTGGCATCCCAGATTTTCTCCCCCCTGGAGGACAGTTCTTTAG 2366926 Query 30150 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCC 30209 |||||||| || | | ||||| |||| |||||||| || ||||||| || || | Sbjct 2366927 CATTTGTGGATCCCTTAATAAACCATAGCAACTCCTCCAAAACACCCTTCCAGAATACTC 2366986 Query 30210 TCTTGGTCGTGAGGAGGGGAAACT-GTCCCTTGAGGCCGTACCTCGCCTG 30258 |||| ||||| || ||||| | || || | ||| ||| | |||||| Sbjct 2366987 GTTTGGCTGTGAGCAGAGGAAATTCATCTCTCG-GGCTGTAGCACGCCTG 2367035 >seq5010 Length=4126613 Score = 149 bits (164), Expect = 5e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | |||||||||||||| |||||| Sbjct 1433164 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 1433223 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || ||||| || |||||||||||||| |||||||| || ||||| || | | Sbjct 1433224 ACACCAAGGCCCATATCTCCTGACCTCTGGTAAAGCTGGCAGGACAGCTCCCCATTCACC 1433283 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | ||||||||| ||||| || ||||| ||| Sbjct 1433284 ACGTAGAACTGGCAGAGGGCATGGCAAGGAGGCAGTGCCATCAGA 1433328 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCC-TGTGCTCGAA 30075 ||||||||||||||||| || || || || |||||||| || || |||| ||| ||| Sbjct 1439420 AAATGCCTCCACTGGAAGCCATAAACTGGACCCAGGTCCCCTTCCTCCCGAGTG-GAGAA 1439478 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| |||||| |||||||| ||| || ||||| |||||||| || || ||| | Sbjct 1439479 TCCCAGGCTGTCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCCTGGA 1439538 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||| || ||||| | ||||| || || Sbjct 1439539 GGACAGTTCTTTAGCATTTGTAGATCC 1439565 >seq1271 Length=1277762 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/173 (73%), Gaps = 11/173 (6%) Strand=Plus/Minus Query 114331 ATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACC 114390 |||||| || || ||||||||||| || || |||||||| ||||||| ||||| ||||| Sbjct 107836 ATTCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACC 107777 Query 114391 TCTGT-CGGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCAAAGTCTCA 114449 | ||| | ||||| || | ||||| | | |||| || | || || | || Sbjct 107776 T-TGTACTGAAGAGGTTGTGGTCATTCTTTGGAAGTACTTGACCTCGTTCCTGAG----- 107723 Query 114450 CCGGATGCCACGGCA-GATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACG 114500 | ||| |||| |||| |||| | ||| || |||||||||||| ||||| |||| Sbjct 107722 CAGGA-GCCAGGGCAGGATC-CTGTTCTTGCCGATGCCCATGTTCTGGGCACG 107672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405396051132736