Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq15815 223 3e-53 seq5010 129 4e-25 seq10112 122 6e-23 >seq15815 Length=3425397 Score = 223 bits (246), Expect = 3e-53 Identities = 431/625 (69%), Gaps = 17/625 (3%) Strand=Plus/Plus Query 27106 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 27165 ||||| ||||| || || | || ||||||| | ||||| || || | ||||| |||||| Sbjct 2366396 GGAAAAGGTCTTGGTTCTCGCTGGAGCTGAATTTTCAGTGGCTCAATGTGATTCAGGTAA 2366455 Query 27166 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 27225 || | || ||||||| | | ||||| || || | | || | |||| ||| || Sbjct 2366456 ACATATGCATCTCCCAAAATA-GTACAAAATCACCTGACTTCAGGTCTGTGATGTGTGCG 2366514 Query 27226 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 27285 |||||||| | || || | |||||||||||||| ||||| || || || ||| | | Sbjct 2366515 ATCATGTAGCTTAGCGGACA-TAGCTGGCGATGTTGAAGGGCACACCCAGGCCCGTACCT 2366573 Query 27286 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATG 27345 || ||||||||||| || || || || ||||| |||| || || |||| || | | Sbjct 2366574 CCTGACCTCTGGTAAAGTTGGCAGGACAGCTCCCCATTCACCACATAGAACTAGCAGAGG 2366633 Query 27346 GCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACG 27402 | || || | || || ||||| |||| ||| ||||| ||||||||||| ||| Sbjct 2366634 ACTTGACAAGAAGCCAGCGCCATCAGAGG---AAGATCTTTTGGGTTCCAGGCACAC--- 2366687 Query 27403 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 27462 ||||| | ||| || | |||| | ||||| || | | || ||||||| || Sbjct 2366688 ATGATTCTTCTG---TCAGTGTTGGTTTTGATGGTATCAATAACTTTCTGCAGCTTGTCT 2366744 Query 27463 ACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAT 27522 | || || ||||| || ||| || |||| |||||||| |||||| |||| Sbjct 2366745 GCTCCTTGACCTGAGTAATCAGAATCCATATCTTTGTAGTCTGCTCCAAAATGCATCCAC 2366804 Query 27523 TGGAACCCGTACACCGGTCCCAGGTCTCC-CTCTTCCCTGTGCTCGAAGCCC-CTCTTGT 27580 ||||| || || || || | |||||| || ||| || ||| ||| ||| ||| Sbjct 2366805 TGGAAACCATAAACTGGACTCAGGTCCCCTTTCTGCCGAGTG-GAGAATCCCTAGGCTGT 2366863 Query 27581 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 27640 ||| |||||| | ||| || ||||| |||||||| || ||||| | ||| || |||| Sbjct 2366864 CCAGAAAGTCCCGGGATCCATTGGCATCCCAGATTTTCTCCCCCCTGGAGGACAGTTCTT 2366923 Query 27641 TGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGA 27700 | | |||||||| || | | ||||| |||| |||||||| || ||||||| || | Sbjct 2366924 TAGCATTTGTGGATCCCTTAATAAACCATAGCAACTCCTCCAAAACACCCTTCCAGAATA 2366983 Query 27701 CCCTCTTGGTCGTGAGGAGGGGAAA 27725 | | |||| ||||| || ||||| Sbjct 2366984 CTCGTTTGGCTGTGAGCAGAGGAAA 2367008 >seq5010 Length=4126613 Score = 129 bits (142), Expect = 4e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || | |||||||||||||| ||||| Sbjct 1433164 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 1433223 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || ||||| || || ||||||||||| ||||| || || ||||| |||| Sbjct 1433224 ACACCAAGGCCCATATCTCCTGACCTCTGGTAAAGCTGGCAGGACAGCTCCCCATTCACC 1433283 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | ||| ||||| ||||| || ||||| || Sbjct 1433284 ACGTAGAACTGGCAGAGGGCATGGCAAGGAGGCAGTGCCATCAG 1433327 Score = 100 bits (110), Expect = 2e-16 Identities = 125/169 (74%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| ||||| || ||||||||||| ||||| || || || || |||||||| Sbjct 1439398 CATATCTTTGTAGTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAGGTC 1439457 Query 27549 TCCCTCTTCCC-TGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 || || |||| ||| ||| ||| |||||| |||||||| ||| || ||||| | Sbjct 1439458 CCCTTCCTCCCGAGTG-GAGAATCCCAGGCTGTCCAGAAAGTCTCGGGATCCATTGGCAT 1439516 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||||||| || || ||| | ||| || ||||| | ||||| || || Sbjct 1439517 CCCAGATTTTCACTCCCCTGGAGGACAGTTCTTTAGCATTTGTAGATCC 1439565 >seq10112 Length=11852372 Score = 122 bits (134), Expect = 6e-23 Identities = 400/619 (65%), Gaps = 46/619 (7%) Strand=Plus/Plus Query 27106 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 27165 ||||| ||||| || || | || ||||||| | ||||| || | | | || |||||| Sbjct 4836216 GGAAAAGGTCTTGGTTCTCCCTGGAGCTGAATTTTCAGTGGCTAGATATAATTCAGGTAA 4836275 Query 27166 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 27225 || | || ||||||| || || || || || || | | || || |||| ||| || Sbjct 4836276 ACACGTGCATCTCCCAAAGTATGTACGAAATCACCTGACTTCAGGCCTGTGATGTGTGCT 4836335 Query 27226 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 27285 |||||||| ||||| | | |||||| |||||| ||||| || || || ||||| || Sbjct 4836336 ATCATGTAGGTGAGTGGGGCATAGCTGCAGATGTTGAAGGGCACACCCAGGCCCATATCT 4836395 Query 27286 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATG 27345 || | || |||||| ||||| || ||| ||| Sbjct 4836396 CCTGCCCCCTGGTACAGCTGGCA---GAGG--------------GTA------------- 4836425 Query 27346 GCGTGGCACGGAGGAAGAGCCATGAGGCCCAAG-TCTTTGGGGTTCC-AGGCGCACACGA 27403 ||||| ||||| | |||| | ||| ||||| |||| || |||| |||| || Sbjct 4836426 ---TGGCAAGGAGGTGGCACCATCGG----AAGATCTTTTGGGTCCCTAGGCACACATGA 4836478 Query 27404 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 27463 |||| | ||||| || |||| | |||||| || | || ||||| || || | Sbjct 4836479 TGATTCTTCTGTCATC---GTTGGTTTTGATGATATCAATCATTTTCTGCAGATGGTCTA 4836535 Query 27464 CCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATT 27523 | || || ||||| ||| ||| || |||| ||||| || ||||||||||| | Sbjct 4836536 CTCCTTGACCTGAGTAATCTGAATCCATATCTTTGTAGTCTGCCCC-AAATGCCTCCACT 4836594 Query 27524 GGAACCCGTACACCGGTCCCAGGTCTCCCT-CTTCCCTGTGCTCGAAGCCCCTCTTGTCC 27582 |||| | || || | |||| ||| || | || || ||| ||| ||| | ||| Sbjct 4836595 GGAAATCATAAACGGTGCCCAAGTCCCCTTCCTGCCGAGTG-GAGAATCCCAGGCTTTCC 4836653 Query 27583 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT- 27641 | ||||| ||| || ||| | |||||||| ||||| || | ||| | ||||| Sbjct 4836654 AGAAAGTTGGGGGAGCCATTGACATCCCAGATTTTTACTTCCCTAGGGGACTGTTCTTTA 4836713 Query 27642 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 27701 |||| || |||| | |||||||||| ||||| | || ||||||| || || Sbjct 4836714 CCAGTTGTGGGTCCCTTAAAAAAACCACAGCAACTCCTTTAAAACATCCTTCCAGAATAC 4836773 Query 27702 CCTCTTGGTCGTGAGGAGG 27720 | ||| | ||||| ||| Sbjct 4836774 TCATTTGATTGTGAGCAGG 4836792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368809285885856