Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq12175 134 2e-26 seq33482 132 7e-26 seq14520 87.8 3e-12 >seq12175 Length=10297911 Score = 134 bits (148), Expect = 2e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 8362 GAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTT 8421 ||| |||| || || ||||| |||||||||||||||||| | || ||||||||| || Sbjct 106080 GAATCCCATCTCACCACCGAAAGTGCTGGGCTTCCAGTACTCTGGAGAGCAGATGGGATT 106139 Query 8422 CGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGAT 8481 | | | ||| || |||||||| || |||||||| | ||| | || ||||| || ||||| Sbjct 106140 CCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATACTCTCCCCAAAGAT 106199 Query 8482 GGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTC 8541 || ||| || || |||||| | | || || | || | ||||| || |||| ||| Sbjct 106200 GGAGTTAGGCTGGCACTTTTCAAGAAGCAACCCAGGATAGAACTCCAATGCGTCGATGTC 106259 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 ||| || || || | || ||||| |||||||| ||||||| Sbjct 106260 TCCATACAGCTCCTCCAACTCAGCAGCCATCTCCTTCTCTCCTG 106303 >seq33482 Length=11402808 Score = 132 bits (146), Expect = 7e-26 Identities = 201/286 (70%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || || || ||||| ||||| | |||| ||||||||||| | || | |||| |||| Sbjct 7134180 AAGGGGCAGCCCTTCACGTTATTGCAGATGAGAGACTGAATCGAGGCAGTGTTGATGATC 7134121 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || || || ||||| || || ||||| ||||||||||| || || ||||| Sbjct 7134120 TTAAAACCTACTTCTCCCCCAAAAGTGCTTGGCTTCCAGTAGTGAGGAGAACAGATAGGA 7134061 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| | |||||| || || || | || | ||| |||| || ||| Sbjct 7134060 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 7134001 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 || || | || || |||||||| |||| | | | ||||||||||| ||| || | | Sbjct 7134000 ATAGCATCTGGGCGAGGCTTTTCTACCAGAAGGGCAGGGTACAGCTCCATAGCATCAATG 7133941 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || || || ||| | || ||||| || ||||| ||||||| Sbjct 7133940 TCACCATAGAGAGCCTCCAACTCTGCAGCCATTTCCTTCTCTCCTG 7133895 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 ||||||||||| |||||||| |||||||| || ||||| | || ||| ||||| Sbjct 7130709 CTTACCCCATGACCCAGTCCCCGGGTGAAGGCAGGACCTCGTTTCTGGTCTGTCTTAAAA 7130650 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 ||||| ||||||||||| ||| |||| || || ||||| | ||| ||||| ||||||||| Sbjct 7130649 AACTGATGCGTGAAATGCTGGGCAAAGAATGCGAACATCATGTTTGTGCCTTGGGGATCG 7130590 Query 9770 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 || |||| | || | | |||| ||||| || ||| Sbjct 7130589 GGGATGAACTTTCTTCTTAAAAGAACTTTTTGCAGAAC 7130552 >seq14520 Length=798628 Score = 87.8 bits (96), Expect = 3e-12 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 8378 CCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTG 8437 || || ||||| ||||||||||| || |||||||| || | || || ||||| Sbjct 91987 CCAAAAGTGCTTGGCTTCCAGTAGTGAGGAGAGCAGATAGGATTAGACA--AGTCCTTTC 91930 Query 8438 AGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGC 8497 | |||||| || || | | || | ||| |||| || |||| || | ||||| ||| Sbjct 91929 AAGGAGAATGGTGCTCTGACTTCTACTATGGTCTCCCCAAAGACAGCATCTGGACGAGGC 91870 Query 8498 TTTTCCACCAAGAATCCG-GTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCT 8556 |||| |||| |||| | | |||| |||||||| | || ||| ||||| || ||| Sbjct 91869 TTTTTCACC-AGAAGAGGAGGATACAACTCCACAGTATTGATGTCACCGTAGAGAGCCTC 91811 Query 8557 GAGTTCGGCAGCGATCTCCTTTTCTCCTGTT 8587 | || ||||| || ||||| ||||||||| Sbjct 91810 CAACTCCGCAGCCATTTCCTTATCTCCTGTT 91780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715488066263040